Browse Element(s) Details


Os.33212.2.S1_at

Description gb:NM_190319.1
DB_XREF= gi:34907721
GEN=P0035F12.21
TID=Os.33212.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.33212 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative MRP-like ABC transporter (P0035F12.21), mRNA.
PROD=putative MRP-like ABC transporter
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6758011/11ABC transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67530Os.5174.1.S1_at11/111+39579852..39583588AMP-binding enzyme family protein, expressed
LOC_Os01g67540OsAffx.21790.1.S1_at11/111+39584856..39588099AMP-binding enzyme family protein, expressed
LOC_Os01g67550Os.54247.1.S1_at6/111+39589761..39593236FAD binding domain containing protein
LOC_Os01g67560Os.14630.1.S1_at11/111+39593630..39596178Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os01g67560Os.14630.2.S1_at11/111+39593630..39596178Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os01g67570Os.14855.1.S1_at11/111+39597394..39601841expressed protein
LOC_Os01g67580Os.33212.2.S1_at11/111+39603067..39609733ABC transporter family protein, expressed
LOC_Os01g67580Os.50194.1.S1_at1/111+39603067..39609733ABC transporter family protein, expressed
LOC_Os01g67590Os.14090.1.S1_a_at11/111+39616212..39623444Peptidase family M3 containing protein, expressed
LOC_Os01g67600OsAffx.23960.1.S1_s_at11/111+39623837..39626634esterase, putative, expressed
LOC_Os01g67600Os.48005.1.S1_x_at11/111+39623837..39626634esterase, putative, expressed
LOC_Os01g67610OsAffx.11775.1.S1_at11/111+39629006..39630045hypothetical protein
LOC_Os01g67610OsAffx.11775.2.S1_at10/111+39629006..39630045hypothetical protein
LOC_Os01g67610OsAffx.11775.1.S1_x_at10/111+39629006..39630045hypothetical protein
LOC_Os01g67620OsAffx.13122.2.S1_at10/111+39632362..39633060hypothetical protein
LOC_Os01g67620OsAffx.22604.1.S1_x_at1/111+39632362..39633060hypothetical protein
LOC_Os01g67630OsAffx.21788.1.S1_at11/111+39634312..39637150POT family protein, expressed
LOC_Os01g67630OsAffx.21788.1.S1_x_at11/111+39634312..39637150POT family protein, expressed
LOC_Os01g67630OsAffx.21788.2.S1_x_at2/111+39634312..39637150POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33212.2.S1_at--130--9751Chr01:39604013..39604037 (25 bp)
TAATTCACGCCTTGTTTCGGATTGT
LOC_Os01g67580
Os.33212.2.S1_at--978--5411Chr01:39603894..39603918 (25 bp)
GAACCGACTCTTTTCCAAGGGACAG
LOC_Os01g67580
Os.33212.2.S1_at--322--8571Chr01:39603857..39603881 (25 bp)
TGGATCCTCTACAGCAGCATCTGGA
LOC_Os01g67580
Os.33212.2.S1_at--331--8011Chr01:39603662..39603684 (23 bp)
GGAGGTTTTGCATAAGTGCCGCCTT
LOC_Os01g67580
Os.33212.2.S1_at--233--2311Chr01:39603462..39603486 (25 bp)
AAAGGCAACTTGTATGCTTGGCCAG
LOC_Os01g67580
Os.33212.2.S1_at--841--4931Chr01:39603447..39603471 (25 bp)
GCTTGGCCAGGGTATTGCTAATGAA
LOC_Os01g67580
Os.33212.2.S1_at--348--5431Chr01:39603400..39603424 (25 bp)
GAAGCCACAGCATCGGTTGATACCG
LOC_Os01g67580
Os.33212.2.S1_at--778--3571Chr01:39603307..39603331 (25 bp)
CATAGGATTCCTACTGTGATTGACA
LOC_Os01g67580
Os.33212.2.S1_at--565--2131Chr01:39603285..39603309 (25 bp)
ACAGTGACCTTGTTCTTGTCCTAGG
LOC_Os01g67580
Os.33212.2.S1_at--758--6571Chr01:39603123..39603147 (25 bp)
GATTCTCCAGAAAATCTCCTCAGAG
LOC_Os01g67580
Os.33212.2.S1_at--108--1311Chr01:39603100..39603124 (25 bp)
AGATGAATCATCAGCTTTCTCAAAG
LOC_Os01g67580
Target Sequence 
TAATTCACGCCTTGTTTCGGATTGTTGAACCATCTGAAGGACGGATACTCATAGATGATGTTGATATATCGCTTTTGGGA
GTGCATGATCTGCGGTCAAGATTAAGTGTTATACCACAAGAACCGACTCTTTTCCAAGGGACAGTCAGAACAAACCTGGA
TCCTCTACAGCAGCATCTGGACACTGAAATATGGGAGGTTTTGCATAAGTGCCGCCTTGAGGAGATTGTGAGAGAAGACA
GTAGATTGTTGGATGCACCAGTTGTTGAAGATGGGGGAAACTGGAGCGTAGGACAAAGGCAACTTGTATGCTTGGCCAGG
GTATTGCTAATGAAGAAGAAAATACTTGTTCTGGATGAAGCCACAGCATCGGTTGATACCGCAACAGATAATATCATCCA
AAAGACTATAAGGCAAGAGACAAACAATTGCACAGTTATTACAATTGCACATAGGATTCCTACTGTGATTGACAGTGACC
TTGTTCTTGTCCTAGGTGAAGGTAAGATACTAGAGTTTGATTCTCCAGAAAATCTCCTCAGAGATGAATCATCAGCTTTC
TCAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33212.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis