Browse Element(s) Details


Os.14855.1.S1_at

Description gb:AK067661.1
DB_XREF= gi:32977679
TID=Os.14855.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14855 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0035F12.20 (P0035F12.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013119G01, full insert sequence.
FL= gb:AK067661.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6757011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67520Os.49594.1.S1_at11/111+39571459..39573977VTC2, putative, expressed
LOC_Os01g67530Os.5174.1.S1_at11/111+39579852..39583588AMP-binding enzyme family protein, expressed
LOC_Os01g67540OsAffx.21790.1.S1_at11/111+39584856..39588099AMP-binding enzyme family protein, expressed
LOC_Os01g67550Os.54247.1.S1_at6/111+39589761..39593236FAD binding domain containing protein
LOC_Os01g67560Os.14630.1.S1_at11/111+39593630..39596178Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os01g67560Os.14630.2.S1_at11/111+39593630..39596178Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os01g67570Os.14855.1.S1_at11/111+39597394..39601841expressed protein
LOC_Os01g67580Os.33212.2.S1_at11/111+39603067..39609733ABC transporter family protein, expressed
LOC_Os01g67580Os.50194.1.S1_at1/111+39603067..39609733ABC transporter family protein, expressed
LOC_Os01g67590Os.14090.1.S1_a_at11/111+39616212..39623444Peptidase family M3 containing protein, expressed
LOC_Os01g67600OsAffx.23960.1.S1_s_at11/111+39623837..39626634esterase, putative, expressed
LOC_Os01g67600Os.48005.1.S1_x_at11/111+39623837..39626634esterase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14855.1.S1_at--18--8491Chr01:39597968..39597992 (25 bp)
TGGCAAAGATTACTACGACCCGAGT
LOC_Os01g67570
Os.14855.1.S1_at--1058--7051Chr01:39597945..39597969 (25 bp)
GTAAGCCTATGTACCGCTACGACTA
LOC_Os01g67570
Os.14855.1.S1_at--1064--7631Chr01:39597917..39597941 (25 bp)
GGGAGAGCCCAAGAACACCGAGAAG
LOC_Os01g67570
Os.14855.1.S1_at--422--7651Chr01:39597879..39597903 (25 bp)
GGGAGGTGGAGCTTCACAACCAGCA
LOC_Os01g67570
Os.14855.1.S1_at--171--2651Chr01:39597862..39597886 (25 bp)
AACCAGCAGGTTATCGGAGACGCGA
LOC_Os01g67570
Os.14855.1.S1_at--948--5351Chr01:39597692..39597716 (25 bp)
GAAGATGATGGATCCCCAGGCGCCA
LOC_Os01g67570
Os.14855.1.S1_at--821--891Chr01:39597675..39597699 (25 bp)
AGGCGCCACACAATCGGTGTTTCAT
LOC_Os01g67570
Os.14855.1.S1_at--211--3111Chr01:39597533..39597557 (25 bp)
AATATGCTTTGCCTGGCATAGCCCT
LOC_Os01g67570
Os.14855.1.S1_at--23--3851Chr01:39597483..39597507 (25 bp)
CTGCTAGAGGCTATGCTGTTTGCTT
LOC_Os01g67570
Os.14855.1.S1_at--963--3871Chr01:39597468..39597492 (25 bp)
CTGTTTGCTTGGTCACCTGTTCAAA
LOC_Os01g67570
Os.14855.1.S1_at--187--7831Chr01:39597458..39597482 (25 bp)
GGTCACCTGTTCAAAGCTGTAATTT
LOC_Os01g67570
Target Sequence 
TGGCAAAGATTACTACGACCCGAGTAAGCCTATGTACCGCTACGACTACTGGGGAGAGCCCAAGAACACCGAGAAGACCA
AGCTAGAGAGGGAGGTGGAGCTTCACAACCAGCAGGTTATCGGAGACGCGAAGAAATGGTGCGAGATGTCGTACGACGAC
TATGTCCGGCAGAAGGTGCGGATGGAAGCCGCTGAAGCCAGGGAGAGGCAGAGGAAGGCATCGGAGCCACAGGAGGAGGA
CGAGAAGTATGAGGATGAGATGGACCTTGACTTGAAGAAGATGATGGATCCCCAGGCGCCACACAATCGGTGTTTCATCA
CAAAATGACAGGTTAGAATGTTAGGCACACTATGATTTAGACATAGTAGCTCTTTTTTTGGGTGTTGTATGTGCAAATTT
TGTAGGAGATGTAACACTGTTGATGATAGACCAGCAATATGCTTTGCCTGGCATAGCCCTGGATGAAGCCACAGTTGAAG
CTAGACTGCTAGAGGCTATGCTGTTTGCTTGGTCACCTGTTCAAAGCTGTAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14855.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis