Browse Element(s) Details


Os.50194.1.S1_at

Description gb:AK120023.1
DB_XREF= gi:37989646
TID=Os.50194.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50194 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-186-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-186-C06, full insert sequence.
FL= gb:AK120023.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4203011/11Potassium transporter 10, putative, expressed
LOC_Os01g675801/11ABC transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g42000Os.9313.1.S1_at11/116+25213055..25214303AhpC/TSA family protein, expressed
LOC_Os06g42010Os.35344.18.S1_x_at11/116+25220588..25224481Transposable element protein, putative, MuDR
LOC_Os06g42010Os.35344.3.S1_x_at9/116+25220588..25224481Transposable element protein, putative, MuDR
LOC_Os06g42010OsAffx.22940.5.S1_x_at3/116+25220588..25224481Transposable element protein, putative, MuDR
LOC_Os06g42020Os.48268.1.S1_at11/116+25230371..25234900glycosyltransferase 5, putative, expressed
LOC_Os06g42020OsAffx.5081.1.S1_x_at11/116+25230371..25234900glycosyltransferase 5, putative, expressed
LOC_Os06g42020OsAffx.5081.1.S1_at11/116+25230371..25234900glycosyltransferase 5, putative, expressed
LOC_Os06g42030Os.5614.1.S1_x_at11/116+25234828..25241950Potassium transporter 10, putative, expressed
LOC_Os06g42030Os.5614.1.S1_at11/116+25234828..25241950Potassium transporter 10, putative, expressed
LOC_Os06g42030Os.50194.1.S1_at11/116+25234828..25241950Potassium transporter 10, putative, expressed
LOC_Os06g42030OsAffx.28059.1.S1_x_at11/116+25234828..25241950Potassium transporter 10, putative, expressed
LOC_Os06g42040NANA6+25244900..25245349hypothetical protein
LOC_Os06g42050OsAffx.18176.2.S1_at10/116+25258476..25260162hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0009605biological_processresponse to external stimulus
GO:0016020cellular_componentmembrane
GO:0015079molecular_functionpotassium ion transporter activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50194.1.S1_at--860--2971Chr06:25235379..25235403 (25 bp)
AATGTATTTACCCTTTTGCTCTATC
LOC_Os06g42030
Os.50194.1.S1_at--551--371Chr06:25235344..25235368 (25 bp)
ATCACGACCTTGCTTCCAGAATACT
LOC_Os06g42030
Os.50194.1.S1_at--146--3311Chr06:25235307..25235331 (25 bp)
CACAAGATCACATCACCTGTTCATG
LOC_Os06g42030
Os.50194.1.S1_at--718--5271Chr06:25235260..25235284 (25 bp)
GAATGACATCTGGTCCTAGTCTGTG
LOC_Os06g42030
Os.50194.1.S1_at--310--8592Chr06:25235237..25235261 (25 bp)
TGGTTTGGATCCTTGCAGACTTGCA
LOC_Os06g42030
Os.50194.1.S1_at--1038--2391Chr06:25235204..25235228 (25 bp)
AAACAAATCCTCACTGTTCTCGAGT
LOC_Os06g42030
Os.50194.1.S1_at--979--8791Chr06:25235190..25235214 (25 bp)
TGTTCTCGAGTCACATGCAGATCCT
LOC_Os06g42030
Os.50194.1.S1_at--705--6371Chr06:25235171..25235195 (25 bp)
GATCCTCGAATGTCAGCAGTTCAGT
LOC_Os06g42030
Os.50194.1.S1_at--301--1031Chr06:25234973..25234997 (25 bp)
AGGTCAGCTTCTGTGTCAGTATCTC
LOC_Os06g42030
Os.50194.1.S1_at--803--1191Chr06:25234956..25234980 (25 bp)
AGTATCTCTGTTTCTCCTCAAAATA
LOC_Os06g42030
Os.50194.1.S1_at--773--2151Chr06:25234861..25234885 (25 bp)
ACAGCCTCTCTTTTGTACCAGGTGA
LOC_Os06g42030
Target Sequence 
AATGTATTTACCCTTTTGCTCTATCCCAGTCACTGATCACGACCTTGCTTCCAGAATACTAGCATTATGTAACACAAGAT
CACATCACCTGTTCATGTTATTGAGATTCAGAACACTTTGAATGACATCTGGTCCTAGTCTGTGGTTTGGATCCTTGCAG
ACTTGCAGAGCCATGAAACAAATCCTCACTGTTCTCGAGTCACATGCAGATCCTCGAATGTCAGCAGTTCAGTAAGAATC
AAATGTCAGTATGCGGATTGCCAGGAGACAGAAATACAGACAGGCAGACAGACAGTACTGATTGTACCATGTGAAGAGGA
AGTTTCTGAATGAAACACATGACAGAATCATCAGTGTGGTGACTGGTGAACTCAAAGAGAGTCTGAGACAAGAGATGGAA
CAGTAGAGGTCAGCTTCTGTGTCAGTATCTCTGTTTCTCCTCAAAATACTGTATCTCAAATGGATATTCCCAGATTACAC
TTGAACATTAGGAGAAAGAAAAGTTAAAGCAAAGATGTACAGCCTCTCTTTTGTACCAGGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50194.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis