Browse Element(s) Details


OsAffx.28059.1.S1_x_at

Description tigr:9634.m04057
TID=OsAffx.28059.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=K+ potassium transporter, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4203011/11Potassium transporter 10, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g42000Os.9313.1.S1_at11/116+25213055..25214303AhpC/TSA family protein, expressed
LOC_Os06g42010Os.35344.18.S1_x_at11/116+25220588..25224481Transposable element protein, putative, MuDR
LOC_Os06g42010Os.35344.3.S1_x_at9/116+25220588..25224481Transposable element protein, putative, MuDR
LOC_Os06g42010OsAffx.22940.5.S1_x_at3/116+25220588..25224481Transposable element protein, putative, MuDR
LOC_Os06g42020Os.48268.1.S1_at11/116+25230371..25234900glycosyltransferase 5, putative, expressed
LOC_Os06g42020OsAffx.5081.1.S1_x_at11/116+25230371..25234900glycosyltransferase 5, putative, expressed
LOC_Os06g42020OsAffx.5081.1.S1_at11/116+25230371..25234900glycosyltransferase 5, putative, expressed
LOC_Os06g42030Os.5614.1.S1_x_at11/116+25234828..25241950Potassium transporter 10, putative, expressed
LOC_Os06g42030Os.5614.1.S1_at11/116+25234828..25241950Potassium transporter 10, putative, expressed
LOC_Os06g42030Os.50194.1.S1_at11/116+25234828..25241950Potassium transporter 10, putative, expressed
LOC_Os06g42030OsAffx.28059.1.S1_x_at11/116+25234828..25241950Potassium transporter 10, putative, expressed
LOC_Os06g42040NANA6+25244900..25245349hypothetical protein
LOC_Os06g42050OsAffx.18176.2.S1_at10/116+25258476..25260162hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0009605biological_processresponse to external stimulus
GO:0016020cellular_componentmembrane
GO:0015079molecular_functionpotassium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28059.1.S1_x_at--881--9471Chr06:25236267..25236291 (25 bp)
TCTCGTCCATGTCGTCGGGCTACGG
LOC_Os06g42030
OsAffx.28059.1.S1_x_at--582--3711Chr06:25236170..25236194 (25 bp)
CTACGAGCTCGTCAAGAACCTGCCG
LOC_Os06g42030
OsAffx.28059.1.S1_x_at--964--1431Chr06:25236156..25236180 (25 bp)
AGAACCTGCCGGACTGCCAGGAGCA
LOC_Os06g42030
OsAffx.28059.1.S1_x_at--482--1991Chr06:25236144..25236168 (25 bp)
ACTGCCAGGAGCACTCGGTGGTCTG
LOC_Os06g42030
OsAffx.28059.1.S1_x_at--915--8171Chr06:25236033..25236057 (25 bp)
GGAACGCCGGCAAGTACGTCGTCCT
LOC_Os06g42030
OsAffx.28059.1.S1_x_at--898--2831Chr06:25236022..25236046 (25 bp)
AAGTACGTCGTCCTGGCGAACGCGT
LOC_Os06g42030
OsAffx.28059.1.S1_x_at--1002--4031Chr06:25235952..25235976 (25 bp)
CGATGCGGTCGCTGGGAATCAAGAA
LOC_Os06g42030
OsAffx.28059.1.S1_x_at--1019--3071Chr06:25235936..25235960 (25 bp)
AATCAAGAAGGATCCGGCCTGGAGC
LOC_Os06g42030
OsAffx.28059.1.S1_x_at--166--8391Chr06:25235872..25235896 (25 bp)
GGCGACTCGTACCACGACGAGCGCT
LOC_Os06g42030
OsAffx.28059.1.S1_x_at--160--4811Chr06:25235850..25235874 (25 bp)
GCTCGGCGATATACGCGGCCTGCAA
LOC_Os06g42030
OsAffx.28059.1.S1_x_at--889--4071Chr06:25235804..25235828 (25 bp)
CGAGCAGTCCGTGCCTCCGGTTATG
LOC_Os06g42030
Target Sequence 
TCTCGTCCATGTCGTCGGGCTACGGCCTCACGCCGAGGGGCGAGCACTACGCGGCGGCGGTCGACATGCTCGCCAGGGTC
GGCCGGCTCGGCGACGCCTACGAGCTCGTCAAGAACCTGCCGGACTGCCAGGAGCACTCGGTGGTCTGGGGCGCGCTGCT
CGGCGCCGGCAGGAAGCACGGCGACGTGAGGCTGGTCGAGCTCGCCGCGCGCCGCTTCTTCCGGCTGCAGCCGGGGAACG
CCGGCAAGTACGTCGTCCTGGCGAACGCGTACGCCGCGCGCGAGATGTGGGGCAGCGTCGCCGGCGCGCACGAGGCGATG
CGGTCGCTGGGAATCAAGAAGGATCCGGCCTGGAGCGCCGTCGAGGTCCGGGGCAAAAGGCACACCTTCCTCGCCGGCGA
CTCGTACCACGACGAGCGCTCGGCGATATACGCGGCCTGCAACGCGTTGGCCGCCGCCGTCGCCGAGCAGTCCGTGCCTC
CGGTTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28059.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis