Browse Element(s) Details


OsAffx.18176.2.S1_at

Description tigr:9634.m04059
TID=OsAffx.18176.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4205010/11hypothetical protein
LOC_Os10g086302/11hypothetical protein
LOC_Os12g082401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g42020Os.48268.1.S1_at11/116+25230371..25234900glycosyltransferase 5, putative, expressed
LOC_Os06g42020OsAffx.5081.1.S1_x_at11/116+25230371..25234900glycosyltransferase 5, putative, expressed
LOC_Os06g42020OsAffx.5081.1.S1_at11/116+25230371..25234900glycosyltransferase 5, putative, expressed
LOC_Os06g42030Os.5614.1.S1_x_at11/116+25234828..25241950Potassium transporter 10, putative, expressed
LOC_Os06g42030Os.5614.1.S1_at11/116+25234828..25241950Potassium transporter 10, putative, expressed
LOC_Os06g42030Os.50194.1.S1_at11/116+25234828..25241950Potassium transporter 10, putative, expressed
LOC_Os06g42030OsAffx.28059.1.S1_x_at11/116+25234828..25241950Potassium transporter 10, putative, expressed
LOC_Os06g42040NANA6+25244900..25245349hypothetical protein
LOC_Os06g42050OsAffx.18176.2.S1_at10/116+25258476..25260162hypothetical protein
LOC_Os06g42060Os.6046.1.S1_at11/116+25268139..25269606expressed protein
LOC_Os06g42060Os.6046.1.S2_at11/116+25268139..25269606expressed protein
LOC_Os06g42070OsAffx.28060.1.S1_at10/116+25270747..25272847hypothetical protein
LOC_Os06g42080NANA6+25277370..25279203retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g42090NANA6+25279478..25282985transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18176.2.S1_at--812--1773Chr06:25258506..25258530 (25 bp)
ACCGGCTTGCCGCTAGACATGGACG
LOC_Os06g42050
OsAffx.18176.2.S1_at--47--4932Chr06:25258510..25258534 (25 bp)
GCTTGCCGCTAGACATGGACGTGGA
LOC_Os06g42050
OsAffx.18176.2.S1_at--174--851Chr06:25258524..25258548 (25 bp)
ATGGACGTGGAGACCAAATCTGCAA
LOC_Os06g42050
OsAffx.18176.2.S1_at--960--7511Chr06:25258530..25258554 (25 bp)
GTGGAGACCAAATCTGCAAGTGCAA
LOC_Os06g42050
OsAffx.18176.2.S1_at--516--9471Chr06:25258542..25258566 (25 bp)
TCTGCAAGTGCAATTCACGCATGTG
LOC_Os06g42050
OsAffx.18176.2.S1_at--95--10531Chr06:25258555..25258579 (25 bp)
TTCACGCATGTGCTATAGATCTATG
LOC_Os06g42050
OsAffx.18176.2.S1_at--536--3691Chr06:25258575..25258599 (25 bp)
CTATGGAAATGTCCTCTCTTTGCAA
LOC_Os06g42050
OsAffx.18176.2.S1_at--554--2291Chr06:25258581..25258605 (25 bp)
AAATGTCCTCTCTTTGCAACTCCAT
LOC_Os06g42050
OsAffx.18176.2.S1_at--182--2451NONE
AACAATACAAAGTGAATGACGTGCA
NONE
OsAffx.18176.2.S1_at--177--3011Chr06:25260085..25260109 (25 bp)
AATGACGTGCAAGGGATGAACCAGA
LOC_Os06g42050
OsAffx.18176.2.S1_at--347--8991Chr06:25260101..25260125 (25 bp)
TGAACCAGACGAGGTCATTGCTGAT
LOC_Os06g42050
Target Sequence 
ACCGGCTTGCCGCTAGACATGGACGTGGAGACCAAATCTGCAAGTGCAATTCACGCATGTGCTATAGATCTATGGAAATG
TCCTCTCTTTGCAACTCCATCTGCTTCGTTGGTCTTGCGAGAACTAGTTCATGAGCAAGCAAATGACCTAAATGACGATG
ACATGGATACTACTGAAGCTGGGATTGGTGATGAAAATGAGGCTTTCATAGATGACGAAAATGAAAATTATATGGATTTC
GAGTACGTTCGTCACCAATTGCTAGCCCAAGGCCAGAAACATGTTATAAGAACACAATGTAAATCTAAAGAAAATCACGT
AAAAGAGAACATCAAACAATACAAAGTGAATGACGTGCAAGGGATGAACCAGACGAGGTCATTGCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18176.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis