Browse Element(s) Details


OsAffx.5081.1.S1_at

Description tigr:9634.m04056
TID=OsAffx.5081.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cellulose synthase-like protein OsCslA9
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4202011/11glycosyltransferase 5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41990Os.28394.1.S1_s_at11/116+25199281..25209594metalloendopeptidase, putative, expressed
LOC_Os06g41990Os.28394.2.S1_x_at10/116+25199281..25209594metalloendopeptidase, putative, expressed
LOC_Os06g42000Os.9313.1.S1_at11/116+25213055..25214303AhpC/TSA family protein, expressed
LOC_Os06g42010Os.35344.18.S1_x_at11/116+25220588..25224481Transposable element protein, putative, MuDR
LOC_Os06g42010Os.35344.3.S1_x_at9/116+25220588..25224481Transposable element protein, putative, MuDR
LOC_Os06g42010OsAffx.22940.5.S1_x_at3/116+25220588..25224481Transposable element protein, putative, MuDR
LOC_Os06g42020Os.48268.1.S1_at11/116+25230371..25234900glycosyltransferase 5, putative, expressed
LOC_Os06g42020OsAffx.5081.1.S1_x_at11/116+25230371..25234900glycosyltransferase 5, putative, expressed
LOC_Os06g42020OsAffx.5081.1.S1_at11/116+25230371..25234900glycosyltransferase 5, putative, expressed
LOC_Os06g42030Os.5614.1.S1_x_at11/116+25234828..25241950Potassium transporter 10, putative, expressed
LOC_Os06g42030Os.5614.1.S1_at11/116+25234828..25241950Potassium transporter 10, putative, expressed
LOC_Os06g42030Os.50194.1.S1_at11/116+25234828..25241950Potassium transporter 10, putative, expressed
LOC_Os06g42030OsAffx.28059.1.S1_x_at11/116+25234828..25241950Potassium transporter 10, putative, expressed
LOC_Os06g42040NANA6+25244900..25245349hypothetical protein
LOC_Os06g42050OsAffx.18176.2.S1_at10/116+25258476..25260162hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009294biological_processDNA mediated transformation
GO:0009618biological_processresponse to pathogenic bacteria
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5081.1.S1_at--473--8451Chr06:25234147..25234171 (25 bp)
TGGCGATGCTCTGAAATTAAAATTG
LOC_Os06g42020
OsAffx.5081.1.S1_at--387--4631Chr06:25234149..25234173 (25 bp)
GCGATGCTCTGAAATTAAAATTGCC
LOC_Os06g42020
OsAffx.5081.1.S1_at--625--6331Chr06:25234151..25234175 (25 bp)
GATGCTCTGAAATTAAAATTGCCAG
LOC_Os06g42020
OsAffx.5081.1.S1_at--532--2431Chr06:25234165..25234189 (25 bp)
AAAATTGCCAGGTAAAGCATTCAGG
LOC_Os06g42020
OsAffx.5081.1.S1_at--1083--3151Chr06:25234167..25234191 (25 bp)
AATTGCCAGGTAAAGCATTCAGGAG
LOC_Os06g42020
OsAffx.5081.1.S1_at--35--4351Chr06:25234172..25234196 (25 bp)
CCAGGTAAAGCATTCAGGAGGCCGC
LOC_Os06g42020
OsAffx.5081.1.S1_at--731--7831Chr06:25234175..25234199 (25 bp)
GGTAAAGCATTCAGGAGGCCGCGCA
LOC_Os06g42020
OsAffx.5081.1.S1_at--282--7051Chr06:25234176..25234200 (25 bp)
GTAAAGCATTCAGGAGGCCGCGCAT
LOC_Os06g42020
OsAffx.5081.1.S1_at--884--9831Chr06:25234177..25234201 (25 bp)
TAAAGCATTCAGGAGGCCGCGCATG
LOC_Os06g42020
OsAffx.5081.1.S1_at--286--2351Chr06:25234178..25234202 (25 bp)
AAAGCATTCAGGAGGCCGCGCATGA
LOC_Os06g42020
OsAffx.5081.1.S1_at--736--2711Chr06:25234179..25234203 (25 bp)
AAGCATTCAGGAGGCCGCGCATGAG
LOC_Os06g42020
Target Sequence 
TGGCGATGCTCTGAAATTAAAATTGCCAGGTAAAGCATTCAGGAGGCCGCGCATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5081.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis