Browse Element(s) Details


OsAffx.5081.1.S1_x_at

Description tigr:9634.m04056
TID=OsAffx.5081.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cellulose synthase-like protein OsCslA9
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4202011/11glycosyltransferase 5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41990Os.28394.1.S1_s_at11/116+25199281..25209594metalloendopeptidase, putative, expressed
LOC_Os06g41990Os.28394.2.S1_x_at10/116+25199281..25209594metalloendopeptidase, putative, expressed
LOC_Os06g42000Os.9313.1.S1_at11/116+25213055..25214303AhpC/TSA family protein, expressed
LOC_Os06g42010Os.35344.18.S1_x_at11/116+25220588..25224481Transposable element protein, putative, MuDR
LOC_Os06g42010Os.35344.3.S1_x_at9/116+25220588..25224481Transposable element protein, putative, MuDR
LOC_Os06g42010OsAffx.22940.5.S1_x_at3/116+25220588..25224481Transposable element protein, putative, MuDR
LOC_Os06g42020Os.48268.1.S1_at11/116+25230371..25234900glycosyltransferase 5, putative, expressed
LOC_Os06g42020OsAffx.5081.1.S1_x_at11/116+25230371..25234900glycosyltransferase 5, putative, expressed
LOC_Os06g42020OsAffx.5081.1.S1_at11/116+25230371..25234900glycosyltransferase 5, putative, expressed
LOC_Os06g42030Os.5614.1.S1_x_at11/116+25234828..25241950Potassium transporter 10, putative, expressed
LOC_Os06g42030Os.5614.1.S1_at11/116+25234828..25241950Potassium transporter 10, putative, expressed
LOC_Os06g42030Os.50194.1.S1_at11/116+25234828..25241950Potassium transporter 10, putative, expressed
LOC_Os06g42030OsAffx.28059.1.S1_x_at11/116+25234828..25241950Potassium transporter 10, putative, expressed
LOC_Os06g42040NANA6+25244900..25245349hypothetical protein
LOC_Os06g42050OsAffx.18176.2.S1_at10/116+25258476..25260162hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009294biological_processDNA mediated transformation
GO:0009618biological_processresponse to pathogenic bacteria
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5081.1.S1_x_at--285--6391Chr06:25233709..25233733 (25 bp)
GATCTACAACTTCTTTTTGGTGCGC
LOC_Os06g42020
OsAffx.5081.1.S1_x_at--42--4311Chr06:25233756..25233780 (25 bp)
CCTTTGTGTTTTACTGCCTTGTTGT
LOC_Os06g42020
OsAffx.5081.1.S1_x_at--412--7671Chr06:25233823..25233847 (25 bp)
GGGTTACGTCTATTTGCCATCCATC
LOC_Os06g42020
OsAffx.5081.1.S1_x_at--376--511Chr06:25233845..25233869 (25 bp)
ATCGTCACCATTCTCAATTCTATTG
LOC_Os06g42020
OsAffx.5081.1.S1_x_at--986--2891Chr06:25234019..25234042 (24 bp)
AAGGTCATTGCACTTACTTATCTTT
LOC_Os06g42020
OsAffx.5081.1.S1_x_at--773--1831Chr06:25234088..25234112 (25 bp)
ACGCTGATCGGCCTGTTAGAGACAG
LOC_Os06g42020
OsAffx.5081.1.S1_x_at--32--5831Chr06:25234135..25234159 (25 bp)
GACCGAAAAGCTTGGCGATGCTCTG
LOC_Os06g42020
OsAffx.5081.1.S1_x_at--285--2351Chr06:25234178..25234202 (25 bp)
AAAGCATTCAGGAGGCCGCGCATGA
LOC_Os06g42020
OsAffx.5081.1.S1_x_at--213--31Chr06:25234300..25234324 (25 bp)
ATTGGAGCTTGGTTTTTCAGCCTAC
LOC_Os06g42020
OsAffx.5081.1.S1_x_at--52--5331Chr06:25234360..25234384 (25 bp)
GAAGGGCTATTACAGTCTCTTCCTT
LOC_Os06g42020
OsAffx.5081.1.S1_x_at--939--3031Chr06:25234392..25234416 (25 bp)
AATCCATCACCTTTTTCATCATCGG
LOC_Os06g42020
Target Sequence 
GATCTACAACTTCTTTTTGGTGCGCAAGATTATTGGACACATTGTGACCTTTGTGTTTTACTGCCTTGTTGTCCCGGCAA
CGGTTTTAATTCCAGAAGTTGAGATACCAAGGTGGGGTTACGTCTATTTGCCATCCATCGTCACCATTCTCAATTCTATT
GGGACTCCAAGGTCATTGCACTTACTTATCTTTTGGGTCCTCTTCGAGAATGTTATGTCACTGCATAGAACAAAGGCCAC
GCTGATCGGCCTGTTAGAGACAGGCAGGGTGAATGAATGGGTGGTGACCGAAAAGCTTGGCGATGCTCTGAAATTAAAAT
TGCCAGGTAAAGCATTCAGGAGGCCGCGCATGAGGATAGGAGACAGGGTGAATGCATTGGAGCTTGGTTTTTCAGCCTAC
CTGTCCTTCTGTGGATGCTATGATATTGCCTATGGGAAGGGCTATTACAGTCTCTTCCTTTTTCTCCAATCCATCACCTT
TTTCATCATCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5081.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis