Browse Element(s) Details


Os.48268.1.S1_at

Description gb:CA764729
DB_XREF= gi:27546633
DB_XREF=AF53-Rpf_04_L10_T7_045.ab1
CLONE=C0001426
TID=Os.48268.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.48268 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T48403 (A.thaliana) T48403 hypothetical protein F17C15.180 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4202011/11glycosyltransferase 5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41990Os.28394.1.S1_s_at11/116+25199281..25209594metalloendopeptidase, putative, expressed
LOC_Os06g41990Os.28394.2.S1_x_at10/116+25199281..25209594metalloendopeptidase, putative, expressed
LOC_Os06g42000Os.9313.1.S1_at11/116+25213055..25214303AhpC/TSA family protein, expressed
LOC_Os06g42010Os.35344.18.S1_x_at11/116+25220588..25224481Transposable element protein, putative, MuDR
LOC_Os06g42010Os.35344.3.S1_x_at9/116+25220588..25224481Transposable element protein, putative, MuDR
LOC_Os06g42010OsAffx.22940.5.S1_x_at3/116+25220588..25224481Transposable element protein, putative, MuDR
LOC_Os06g42020Os.48268.1.S1_at11/116+25230371..25234900glycosyltransferase 5, putative, expressed
LOC_Os06g42020OsAffx.5081.1.S1_x_at11/116+25230371..25234900glycosyltransferase 5, putative, expressed
LOC_Os06g42020OsAffx.5081.1.S1_at11/116+25230371..25234900glycosyltransferase 5, putative, expressed
LOC_Os06g42030Os.5614.1.S1_x_at11/116+25234828..25241950Potassium transporter 10, putative, expressed
LOC_Os06g42030Os.5614.1.S1_at11/116+25234828..25241950Potassium transporter 10, putative, expressed
LOC_Os06g42030Os.50194.1.S1_at11/116+25234828..25241950Potassium transporter 10, putative, expressed
LOC_Os06g42030OsAffx.28059.1.S1_x_at11/116+25234828..25241950Potassium transporter 10, putative, expressed
LOC_Os06g42040NANA6+25244900..25245349hypothetical protein
LOC_Os06g42050OsAffx.18176.2.S1_at10/116+25258476..25260162hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009294biological_processDNA mediated transformation
GO:0009618biological_processresponse to pathogenic bacteria
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48268.1.S1_at--988--31Chr06:25234436..25234460 (25 bp)
ATTGTCCCGCACTGATTACAGAACC
LOC_Os06g42020
Os.48268.1.S1_at--397--5431Chr06:25234456..25234480 (25 bp)
GAACCTCGATGAGGCTATCCATCTT
LOC_Os06g42020
Os.48268.1.S1_at--1057--551Chr06:25234472..25234496 (25 bp)
ATCCATCTTGGATCAACGACCGGCT
LOC_Os06g42020
Os.48268.1.S1_at--947--2571Chr06:25234486..25234510 (25 bp)
AACGACCGGCTCTGGTTCTTTCCAG
LOC_Os06g42020
Os.48268.1.S1_at--175--6731Chr06:25234500..25234524 (25 bp)
GTTCTTTCCAGTCTCATGGTGTTAG
LOC_Os06g42020
Os.48268.1.S1_at--565--3491Chr06:25234550..25234574 (25 bp)
CAGGCTTCTCCTGTGTGCAAGTGCA
LOC_Os06g42020
Os.48268.1.S1_at--744--5171Chr06:25234566..25234590 (25 bp)
GCAAGTGCAAAGTTTCCTGACAACA
LOC_Os06g42020
Os.48268.1.S1_at--671--3711Chr06:25234680..25234704 (25 bp)
CTAGCAGTCTGTTCAGAGTCTCTGT
LOC_Os06g42020
Os.48268.1.S1_at--1042--6091Chr06:25234695..25234719 (25 bp)
GAGTCTCTGTGTCACCTTAGCAGAA
LOC_Os06g42020
Os.48268.1.S1_at--645--1531Chr06:25234798..25234822 (25 bp)
AGCATGTAGCTTTAGTTCTGGGAAC
LOC_Os06g42020
Os.48268.1.S1_at--538--31Chr06:25234843..25234867 (25 bp)
ATTGGTTCCTCAATATGCTCACCTG
LOC_Os06g42020
Target Sequence 
ATTGTCCCGCACTGATTACAGAACCTCGATGAGGCTATCCATCTTGGATCAACGACCGGCTCTGGTTCTTTCCAGTCTCA
TGGTGTTAGGTATGCAACAAGATGACAGATCAAGCAGGCTTCTCCTGTGTGCAAGTGCAAAGTTTCCTGACAACAATGAA
GTGTAAAAGCACTGCAAAACAAGCAATAGATAAGGCTTTTAGCTGCTAGGAATATGCTGTTATGTGCATTACAATTGTGA
TGATCTAGCAGTCTGTTCAGAGTCTCTGTGTCACCTTAGCAGAATCTGTAGTGGGAAAGATAGGAGTTGTTAAANGCTTT
ATATTTTCTGCAAANANNAAAAAAATTGGAGTTTTTGGTTTTAGCATGTAGCTTTAGTTCTGGGAACAGGAAGAAAAAAT
AATATGTATTGGTTCCTCAATATGCTCACCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48268.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis