Browse Element(s) Details


Os.5614.1.S1_at

Description gb:AK107132.1
DB_XREF= gi:32992341
TID=Os.5614.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5614 (NCBI UniGene Cluster)
UG_TITLE=MRNA for putative potasium transporter (HAK10 gene)
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-C06, full insert sequence.
FL= gb:AK107132.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4203011/11Potassium transporter 10, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g42000Os.9313.1.S1_at11/116+25213055..25214303AhpC/TSA family protein, expressed
LOC_Os06g42010Os.35344.18.S1_x_at11/116+25220588..25224481Transposable element protein, putative, MuDR
LOC_Os06g42010Os.35344.3.S1_x_at9/116+25220588..25224481Transposable element protein, putative, MuDR
LOC_Os06g42010OsAffx.22940.5.S1_x_at3/116+25220588..25224481Transposable element protein, putative, MuDR
LOC_Os06g42020Os.48268.1.S1_at11/116+25230371..25234900glycosyltransferase 5, putative, expressed
LOC_Os06g42020OsAffx.5081.1.S1_x_at11/116+25230371..25234900glycosyltransferase 5, putative, expressed
LOC_Os06g42020OsAffx.5081.1.S1_at11/116+25230371..25234900glycosyltransferase 5, putative, expressed
LOC_Os06g42030Os.5614.1.S1_x_at11/116+25234828..25241950Potassium transporter 10, putative, expressed
LOC_Os06g42030Os.5614.1.S1_at11/116+25234828..25241950Potassium transporter 10, putative, expressed
LOC_Os06g42030Os.50194.1.S1_at11/116+25234828..25241950Potassium transporter 10, putative, expressed
LOC_Os06g42030OsAffx.28059.1.S1_x_at11/116+25234828..25241950Potassium transporter 10, putative, expressed
LOC_Os06g42040NANA6+25244900..25245349hypothetical protein
LOC_Os06g42050OsAffx.18176.2.S1_at10/116+25258476..25260162hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0009605biological_processresponse to external stimulus
GO:0016020cellular_componentmembrane
GO:0015079molecular_functionpotassium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5614.1.S1_at--316--4591Chr06:25237649..25237673 (25 bp)
GCGCAAGGGAGATCATGTCGCCGTC
LOC_Os06g42030
Os.5614.1.S1_at--421--3791Chr06:25237347..25237371 (25 bp)
CTCGAGGTCGGCATGATTTACTATG
LOC_Os06g42030
Os.5614.1.S1_at--941--4991Chr06:25237337..25237361 (25 bp)
GCATGATTTACTATGTCTAATACAA
LOC_Os06g42030
Os.5614.1.S1_at--347--671Chr06:25237238..25237262 (25 bp)
ATGAAGTTTCGCTTGTATATCCTCG
LOC_Os06g42030
Os.5614.1.S1_at--192--2831Chr06:25237235..25237259 (25 bp)
AAGTTTCGCTTGTATATCCTCGATC
LOC_Os06g42030
Os.5614.1.S1_at--985--10631Chr06:25237231..25237255 (25 bp)
TTCGCTTGTATATCCTCGATCTTGT
LOC_Os06g42030
Os.5614.1.S1_at--706--4931Chr06:25237228..25237252 (25 bp)
GCTTGTATATCCTCGATCTTGTAAT
LOC_Os06g42030
Os.5614.1.S1_at--1153--231Chr06:25237222..25237246 (25 bp)
ATATCCTCGATCTTGTAATTGACCC
LOC_Os06g42030
Os.5614.1.S1_at--571--9391Chr06:25237216..25237240 (25 bp)
TCGATCTTGTAATTGACCCGAGAGT
LOC_Os06g42030
Os.5614.1.S1_at--357--7071Chr06:25237208..25237232 (25 bp)
GTAATTGACCCGAGAGTTTTTGTTG
LOC_Os06g42030
Os.5614.1.S1_at--711--5811Chr06:25237202..25237226 (25 bp)
GACCCGAGAGTTTTTGTTGTAAATG
LOC_Os06g42030
Target Sequence 
GCGCAAGGGAGATCATGTCGCCGTCGCCGTCGCCGCCGCCGGTGGTGGTGGCGCCGAGGAAGAGGGTGCGGTTCGTGCTG
CCGGCGGCGAGCCCGCGGCCGGACGCCGGCGTGCGGGAGGAGCTGCAGGAGCTGATGGACGCGCGCGAGGCCGGCATGGC
GTTCATCCTCGGCCACTCCTACGTCAAGGCCAAGAGCGGCTCCAGCTTCTTCCGGCGGCTGGTCATCAACTTCTGCTACG
ACTTCCTCCGCCGCAACAGCCGCGGCCCCAANTACGCCGTCACCATCCCTCACGCCTCCACCCTCGAGGTCGGCATGATT
TACTATGTCTAATACAAAAAAAAAATCAANCCCCCATAGATAGATAGAAGANCAAGAAGAGAGNCAAAACAGGAGACGAA
TCGAAACAAAAATGAAGTTTCGCTTGTATATCCTCGATCTTGTAATTGACCCGAGAGTTTTTGTTGTAAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5614.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis