Browse Element(s) Details


Os.28394.1.S1_s_at

Description gb:AK066566.1
DB_XREF= gi:32976584
TID=Os.28394.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.28394 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013073O18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013073O18, full insert sequence.
FL= gb:AK066566.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4199011/11metalloendopeptidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41950OsAffx.28055.1.S1_at11/116+25172498..25176364hypothetical protein
LOC_Os06g41950Os.52401.1.S1_at1/116+25172498..25176364hypothetical protein
LOC_Os06g41960OsAffx.28056.1.S1_at11/116+25182038..25183930Protein kinase domain containing protein
LOC_Os06g41970NANA6+25186717..25189956retrotransposon protein, putative, unclassified
LOC_Os06g41980OsAffx.15885.1.S1_at11/116+25197245..25199248Protein kinase domain containing protein, expressed
LOC_Os06g41980OsAffx.15885.1.S1_x_at11/116+25197245..25199248Protein kinase domain containing protein, expressed
LOC_Os06g41990Os.28394.1.S1_s_at11/116+25199281..25209594metalloendopeptidase, putative, expressed
LOC_Os06g41990Os.28394.2.S1_x_at10/116+25199281..25209594metalloendopeptidase, putative, expressed
LOC_Os06g42000Os.9313.1.S1_at11/116+25213055..25214303AhpC/TSA family protein, expressed
LOC_Os06g42010Os.35344.18.S1_x_at11/116+25220588..25224481Transposable element protein, putative, MuDR
LOC_Os06g42010Os.35344.3.S1_x_at9/116+25220588..25224481Transposable element protein, putative, MuDR
LOC_Os06g42010OsAffx.22940.5.S1_x_at3/116+25220588..25224481Transposable element protein, putative, MuDR
LOC_Os06g42020Os.48268.1.S1_at11/116+25230371..25234900glycosyltransferase 5, putative, expressed
LOC_Os06g42020OsAffx.5081.1.S1_x_at11/116+25230371..25234900glycosyltransferase 5, putative, expressed
LOC_Os06g42020OsAffx.5081.1.S1_at11/116+25230371..25234900glycosyltransferase 5, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0005739cellular_componentmitochondrion
GO:0004222molecular_functionmetalloendopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28394.1.S1_s_at--1142--471Chr06:25200202..25200221 (20 bp)
ATCTGGCGAAGAGACGACTGATGAT
LOC_Os06g41990
Os.28394.1.S1_s_at--482--8871Chr06:25199980..25200004 (25 bp)
TGATGAGCTCGATATGGGCCTGCAT
LOC_Os06g41990
Os.28394.1.S1_s_at--244--8011Chr06:25199940..25199964 (25 bp)
GGAGGCCGTGGTCTATCAACAATGA
LOC_Os06g41990
Os.28394.1.S1_s_at--1029--371Chr06:25199926..25199950 (25 bp)
ATCAACAATGACCAGACCAACCACA
LOC_Os06g41990
Os.28394.1.S1_s_at--553--5851Chr06:25199912..25199936 (25 bp)
GACCAACCACATGATTTCTGCAACT
LOC_Os06g41990
Os.28394.1.S1_s_at--751--6531Chr06:25199900..25199924 (25 bp)
GATTTCTGCAACTTCCGATGACTGA
LOC_Os06g41990
Os.28394.1.S1_s_at--600--7651Chr06:25199771..25199795 (25 bp)
GGGATCGAGCTAGCTCCTCAAGCTA
LOC_Os06g41990
Os.28394.1.S1_s_at--881--6051Chr06:25199745..25199769 (25 bp)
GAGTTGTATGATCCTGTTCGAGACA
LOC_Os06g41990
Os.28394.1.S1_s_at--799--2991Chr06:25199720..25199744 (25 bp)
AATGTTGACAGTTGTGCGTTGGCAC
LOC_Os06g41990
Os.28394.1.S1_s_at--274--8251Chr06:25199700..25199724 (25 bp)
GGCACATACTGTTTTAGACTCCTCG
LOC_Os06g41990
Os.28394.1.S1_s_at--85--5731Chr06:25199684..25199708 (25 bp)
GACTCCTCGTGCGTTGAGATCGGAT
LOC_Os06g41990
Target Sequence 
ATCTGGCGAAGAGACGACTGATGATGAGCTCGATATGGGCCTGCATGGCATGGGTCCTATTGGAGGCCGTGGTCTATCAA
CAATGACCAGACCAACCACATGATTTCTGCAACTTCCGATGACTGAACTTTTGTAAAGGGATCGAGCTAGCTCCTCAAGC
TAGGAGTTGTATGATCCTGTTCGAGACAAATGTTGACAGTTGTGCGTTGGCACATACTGTTTTAGACTCCTCGTGCGTTG
AGATCGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28394.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis