Browse Element(s) Details


OsAffx.15885.1.S1_x_at

Description tigr:9634.m04050
TID=OsAffx.15885.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4198011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41950OsAffx.28055.1.S1_at11/116+25172498..25176364hypothetical protein
LOC_Os06g41950Os.52401.1.S1_at1/116+25172498..25176364hypothetical protein
LOC_Os06g41960OsAffx.28056.1.S1_at11/116+25182038..25183930Protein kinase domain containing protein
LOC_Os06g41970NANA6+25186717..25189956retrotransposon protein, putative, unclassified
LOC_Os06g41980OsAffx.15885.1.S1_at11/116+25197245..25199248Protein kinase domain containing protein, expressed
LOC_Os06g41980OsAffx.15885.1.S1_x_at11/116+25197245..25199248Protein kinase domain containing protein, expressed
LOC_Os06g41990Os.28394.1.S1_s_at11/116+25199281..25209594metalloendopeptidase, putative, expressed
LOC_Os06g41990Os.28394.2.S1_x_at10/116+25199281..25209594metalloendopeptidase, putative, expressed
LOC_Os06g42000Os.9313.1.S1_at11/116+25213055..25214303AhpC/TSA family protein, expressed
LOC_Os06g42010Os.35344.18.S1_x_at11/116+25220588..25224481Transposable element protein, putative, MuDR
LOC_Os06g42010Os.35344.3.S1_x_at9/116+25220588..25224481Transposable element protein, putative, MuDR
LOC_Os06g42010OsAffx.22940.5.S1_x_at3/116+25220588..25224481Transposable element protein, putative, MuDR

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15885.1.S1_x_at--1107--9351Chr06:25198650..25198674 (25 bp)
TCGACGTGGCCGACGGGCTCAACTA
LOC_Os06g41980
OsAffx.15885.1.S1_x_at--382--4551Chr06:25198696..25198720 (25 bp)
GCCCTACGTGCACAAGAACCTCAAG
LOC_Os06g41980
OsAffx.15885.1.S1_x_at--264--2111Chr06:25198839..25198863 (25 bp)
ACATGGCGCCGGAGTACCTGGAGCA
LOC_Os06g41980
OsAffx.15885.1.S1_x_at--20--8851Chr06:25198869..25198893 (25 bp)
TGATCGGGCCTCACCTCGACGTGTT
LOC_Os06g41980
OsAffx.15885.1.S1_x_at--1073--9091Chr06:25198911..25198935 (25 bp)
TGCTCGAGCTCCTGTCCGGGAAGGA
LOC_Os06g41980
OsAffx.15885.1.S1_x_at--743--2891Chr06:25199054..25199078 (25 bp)
AAGGTGGCGGCGTTCATGGACTCCC
LOC_Os06g41980
OsAffx.15885.1.S1_x_at--1028--8511Chr06:25199070..25199094 (25 bp)
TGGACTCCCGGTTGCGTGGCGACTA
LOC_Os06g41980
OsAffx.15885.1.S1_x_at--399--9951Chr06:25199093..25199117 (25 bp)
TACCCGTCGGAGGTGGCTCTCGCGA
LOC_Os06g41980
OsAffx.15885.1.S1_x_at--151--4251Chr06:25199165..25199189 (25 bp)
CCGTCGATGGTGGAGGTGTTCCTCT
LOC_Os06g41980
OsAffx.15885.1.S1_x_at--649--811Chr06:25199171..25199195 (25 bp)
ATGGTGGAGGTGTTCCTCTCGCTCT
LOC_Os06g41980
OsAffx.15885.1.S1_x_at--469--9511Chr06:25199193..25199217 (25 bp)
TCTCGGCGTTGCACGGCACAACGTT
LOC_Os06g41980
Target Sequence 
TCGACGTGGCCGACGGGCTCAACTACCTCCACAACTACACCAGGCCGCCCTACGTGCACAAGAACCTCAAGAGCAGCAAC
GTCCTCCTCGACGCCGACTTCCGCGCCAAGGTCTCCAACTTCGGCCTGGCGCGCACCGTCGCCGGCGCCGGCGGGCAGAT
GACGTCGCGCGTCGTGGGTACGCAGGGGTACATGGCGCCGGAGTACCTGGAGCACGGGCTGATCGGGCCTCACCTCGACG
TGTTCGCCTTCGGTGTCGTCCTGCTCGAGCTCCTGTCCGGGAAGGAGGCAGCGCCTGCGCGAGACGGCGGCGAGGGTGGC
GATGGCGAAGCATTGGCGTTGCTGCTGTGGGAGGAAGCGGAGGGGCAGCTGGTGGTCGACGGCGACGATGACGACGCGCG
GGGCAAGGTGGCGGCGTTCATGGACTCCCGGTTGCGTGGCGACTACCCGTCGGAGGTGGCTCTCGCGATGGCTGCGCTGG
CGCTGCGGTGCGTCGCGCGGGAGCCCCGCGCGCGGCCGTCGATGGTGGAGGTGTTCCTCTCGCTCTCGGCGTTGCACGGC
ACAACGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15885.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis