Browse Element(s) Details


OsAffx.28060.1.S1_at

Description tigr:9634.m04060
TID=OsAffx.28060.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4207010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g42050OsAffx.18176.2.S1_at10/116+25258476..25260162hypothetical protein
LOC_Os06g42060Os.6046.1.S1_at11/116+25268139..25269606expressed protein
LOC_Os06g42060Os.6046.1.S2_at11/116+25268139..25269606expressed protein
LOC_Os06g42070OsAffx.28060.1.S1_at10/116+25270747..25272847hypothetical protein
LOC_Os06g42080NANA6+25277370..25279203retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g42090NANA6+25279478..25282985transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g42100NANA6+25288296..25289486hypothetical protein
LOC_Os06g42110OsAffx.28061.1.S1_at11/116+25290574..25291059hypothetical protein
LOC_Os06g42120Os.56146.1.S1_at10/116+25291063..25292336Sulfotransferase domain containing protein, expressed
LOC_Os06g42130Os.2688.1.S1_at3/116+25295198..25296319Leucoanthocyanidin dioxygenase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28060.1.S1_at--61--1691Chr06:25270833..25270857 (25 bp)
AGCCGGCAGTCAGCGTCCGCGAAGA
LOC_Os06g42070
OsAffx.28060.1.S1_at--162--4091Chr06:25271010..25271034 (25 bp)
CGAGCCCGTGATAGGATGGCGCAAT
LOC_Os06g42070
OsAffx.28060.1.S1_at--859--871NONE
ATGGCCGACGGCAAATATATCAACC
NONE
OsAffx.28060.1.S1_at--509--101922Chr12:5303379..5303402 (24 bp)
TATATCAACCGAACCAGAGCGATCC
NONE
OsAffx.28060.1.S1_at--14--26328Chr12:5303384..5303407 (24 bp)
AACCGAACCAGAGCGATCCAAGAGG
NONE
OsAffx.28060.1.S1_at--874--3214Chr06:25272715..25272739 (25 bp)
CAAGAGGTCGAAGCGATGCAGTCTT
LOC_Os06g42070
OsAffx.28060.1.S1_at--19--1651Chr06:25272726..25272750 (25 bp)
AGCGATGCAGTCTTGAACAGCACCA
LOC_Os06g42070
OsAffx.28060.1.S1_at--666--5491Chr06:25272740..25272764 (25 bp)
GAACAGCACCAATGTAGGCGACACA
LOC_Os06g42070
OsAffx.28060.1.S1_at--221--751Chr06:25272751..25272775 (25 bp)
ATGTAGGCGACACAATTGCCAGCCC
LOC_Os06g42070
OsAffx.28060.1.S1_at--491--5611Chr06:25272759..25272783 (25 bp)
GACACAATTGCCAGCCCCGTGTCAG
LOC_Os06g42070
OsAffx.28060.1.S1_at--694--4391Chr06:25272786..25272810 (25 bp)
GCCAAGTTCCGCCAGCGATAAGTAA
LOC_Os06g42070
Target Sequence 
AGCCGGCAGTCAGCGTCCGCGAAGAGGCGCGCGGGGGGCCCGCCACGCGGGCGCCTGGTGTGGTGCGACGGCGGTCCCGG
AGGGCGGCGGCAGCCTCGGTGATGCTCCGGCCGATGGAGGCAAAGGGGCTAGGTGGTCGCGGAGGCGGCGCCCGTGCGGG
CCGGCTATGGCGTGGAGCGAGCCCGTGATAGGATGGCGCAATGGCGGCGGTGGCAAGCTTGCTCGGGGAGGTGGAAAGAT
GGCGACGGGGGATGGGAAGGTGGTGAATGGTGGTGCGGGGCGGATTTCATGGCCGACGGCAAATATATCAACCGAACCAG
AGCGATCCAAGAGGTCGAAGCGATGCAGTCTTGAACAGCACCAATGTAGGCGACACAATTGCCAGCCCCGTGTCAGGTGC
CAAGTTCCGCCAGCGATAAGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28060.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis