Browse Element(s) Details


Os.2688.1.S1_at

Description gb:Y07955.1
DB_XREF= gi:3135073
GEN=ANS
TID=Os.2688.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.2688 (NCBI UniGene Cluster)
DEF=O.sativa mRNA for anthocyanidin synthase.
PROD=anthocyanidin synthase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2749010/11Leucoanthocyanidin dioxygenase, putative, expressed
LOC_Os06g421303/11Leucoanthocyanidin dioxygenase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27440Os.17546.2.S1_x_at1/111+15643761..15650064retrotransposon protein, putative, unclassified
LOC_Os01g27450OsAffx.20451.1.S1_at1/111+15659363..15660813hypothetical protein
LOC_Os01g27459NANA1+15661976..15662155NA
LOC_Os01g27470OsAffx.21134.1.S1_at11/111+15663396..15664454Ubiquitin family protein
LOC_Os01g27480Os.30790.1.S1_at11/111+15671246..15672275glutathione S-transferase GSTF1, putative, expressed
LOC_Os01g27490Os.2688.1.S1_at10/111+15673218..15674807Leucoanthocyanidin dioxygenase, putative, expressed
LOC_Os01g27500OsAffx.14671.1.S1_at11/111+15677420..15678434hypothetical protein
LOC_Os01g27510OsAffx.23418.2.S1_s_at11/111+15680841..15681245hypothetical protein
LOC_Os01g27520Os.10973.1.S1_at11/111+15683651..15687548Asparaginyl-tRNA synthetase, cytoplasmic 3, putative, expressed
LOC_Os01g27530OsAffx.2096.1.S1_at11/111+15687898..15688817expressed protein
LOC_Os01g27530Os.52368.1.S1_at3/111+15687898..15688817expressed protein
LOC_Os01g27550NANA1+15698128..15703297retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0007033biological_processvacuole organization and biogenesis
GO:0009813biological_processflavonoid biosynthesis
GO:0010023biological_processproanthocyanidin biosynthesis
GO:0045431molecular_functionflavonol synthase activity
GO:0045432molecular_functionleucoanthocyanidin dioxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2688.1.S1_at--954--9712Chr06:25295268..25295292 (25 bp)
TCAAGCAGCACGTGCAACGCAAGCT
LOC_Os06g42130
Os.2688.1.S1_at--1138--6432Chr06:25295227..25295251 (25 bp)
GATCAGCAAGACAACAATGCCGCAG
LOC_Os06g42130
Os.2688.1.S1_at--60--3032Chr06:25295212..25295236 (25 bp)
AATGCCGCAGCTGCATCGAACGGAA
LOC_Os06g42130
Os.2688.1.S1_at--345--3171Chr01:15673605..15673629 (25 bp)
AATTGCAATTAGTCGATCTATCGGC
LOC_Os01g27490
Os.2688.1.S1_at--286--451NONE
ATCTATCGGCGAGACAACCCAATAT
NONE
Os.2688.1.S1_at--189--9751Chr01:15673441..15673465 (25 bp)
TAATTGCATTCGTCTGAATTTCAGA
LOC_Os01g27490
Os.2688.1.S1_at--18--7011Chr01:15673370..15673394 (25 bp)
GTACGGATGTTATATCGAGAGCTTA
LOC_Os01g27490
Os.2688.1.S1_at--902--10251Chr01:15673325..15673349 (25 bp)
TTTGTTGTCTATGTATTGCAGTCGA
LOC_Os01g27490
Os.2688.1.S1_at--410--71Chr01:15673311..15673335 (25 bp)
ATTGCAGTCGACTTGTACACCGAGT
LOC_Os01g27490
Os.2688.1.S1_at--731--6091Chr01:15673290..15673314 (25 bp)
GAGTCTTTCCATCCCTATTAAGAGC
LOC_Os01g27490
Os.2688.1.S1_at--665--8634Chr12:23754586..23754605 (20 bp)
TGGGATTTGCTATAAATGTGTCACC
NONE
Target Sequence 
TCAAGCAGCACGTGCAACGCAAGCTGTTCNAGAAGCTCAAGGATCAGCAAGACAACAATGCCGCAGCTGCATCGAACGGA
ATGANAACTAAATAATTGCAATTAGTCGATCTATCGGCGAGACAACCCAATATTTTGAAAAATTGATGGACACACAAAAA
AAACTTTTTTATATAAGAATATGCATTTGGTTGATTCAACATGAAAAATATTTTCAAACCATTATATTTTTAATTGGTTA
TGAATAAACTATAAAAATAATTGCATTCGTCTGAATTTCAGATAAAGGAGAACAAATAATGTTCAACGGAAGCGAAAGCC
GGGGAAATGTACGGATGTTATATCGAGAGCTTAACTTATGAGATGTCTTATATTTTGTTGTCTATGTATTGCAGTCGACT
TGTACACCGAGTCTTTCCATCCCTATTAAGAGCTGGAGCTCAATATTATGATGGGATTTGCTATAAATGTGTCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2688.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis