Browse Element(s) Details


Os.30790.1.S1_at

Description gb:AK108314.1
DB_XREF= gi:32993523
TID=Os.30790.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30790 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative glutathione S-transferase (B1039D07.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-G07, full insert sequence.
FL= gb:AK108314.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2748011/11glutathione S-transferase GSTF1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27440Os.17546.2.S1_x_at1/111+15643761..15650064retrotransposon protein, putative, unclassified
LOC_Os01g27450OsAffx.20451.1.S1_at1/111+15659363..15660813hypothetical protein
LOC_Os01g27459NANA1+15661976..15662155NA
LOC_Os01g27470OsAffx.21134.1.S1_at11/111+15663396..15664454Ubiquitin family protein
LOC_Os01g27480Os.30790.1.S1_at11/111+15671246..15672275glutathione S-transferase GSTF1, putative, expressed
LOC_Os01g27490Os.2688.1.S1_at10/111+15673218..15674807Leucoanthocyanidin dioxygenase, putative, expressed
LOC_Os01g27500OsAffx.14671.1.S1_at11/111+15677420..15678434hypothetical protein
LOC_Os01g27510OsAffx.23418.2.S1_s_at11/111+15680841..15681245hypothetical protein
LOC_Os01g27520Os.10973.1.S1_at11/111+15683651..15687548Asparaginyl-tRNA synthetase, cytoplasmic 3, putative, expressed
LOC_Os01g27530OsAffx.2096.1.S1_at11/111+15687898..15688817expressed protein
LOC_Os01g27530Os.52368.1.S1_at3/111+15687898..15688817expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0009407biological_processtoxin catabolism
GO:0009414biological_processresponse to water deprivation
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0005792cellular_componentmicrosome
GO:0005886cellular_componentplasma membrane
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30790.1.S1_at--594--6511Chr01:15671596..15671620 (25 bp)
GTTTGGGCAAGTTCCGGCGTTCCAG
LOC_Os01g27480
Os.30790.1.S1_at--890--7991Chr01:15671620..15671642 (23 bp)
GGATGGAGACCTGATGCTCTTCGAG
LOC_Os01g27480
Os.30790.1.S1_at--63--8871Chr01:15671631..15671752 (25 bp)
TGATGCTCTTCGAGTCCCGTGCGAT
LOC_Os01g27480
Os.30790.1.S1_at--324--1151Chr01:15671740..15671764 (25 bp)
AGTCCCGTGCGATTTGCCGGTACAT
LOC_Os01g27480
Os.30790.1.S1_at--1153--10671Chr01:15671753..15671777 (25 bp)
TTGCCGGTACATACTGCGGAAGCAC
LOC_Os01g27480
Os.30790.1.S1_at--425--8611Chr01:15671803..15671827 (25 bp)
TGCGGGAAGGCGACCCCTCCGAGTC
LOC_Os01g27480
Os.30790.1.S1_at--608--7031Chr01:15672065..15672089 (25 bp)
GTACACGCGCTACTTCATGGAGATG
LOC_Os01g27480
Os.30790.1.S1_at--351--2051Chr01:15672076..15672100 (25 bp)
ACTTCATGGAGATGCCGTACGAGGT
LOC_Os01g27480
Os.30790.1.S1_at--902--7411Chr01:15672105..15672129 (25 bp)
GTGTTCGGCGCGTACCCTCGCGTGA
LOC_Os01g27480
Os.30790.1.S1_at--48--6491Chr01:15672205..15672229 (25 bp)
GATACGTGTGCTGATGCTTGCTACT
LOC_Os01g27480
Os.30790.1.S1_at--1059--5951Chr01:15672251..15672275 (25 bp)
GAGAATCATACTCTCTCATTCCCAT
LOC_Os01g27480
Target Sequence 
GTTTGGGCAAGTTCCGGCGTTCCAGGATGGAGACCTGATGCTCTTCGAGTCCCGTGCGATTTGCCGGTACATACTGCGGA
AGCACAGGGCGACGGACGAGGCCAACCTGCTGCGGGAAGGCGACCCCTCCGAGTCGGCGGTGGTGGACGCGTGGCTGGAC
GTGGAGGCGCTCCGGTACGAGCCCTCGGTGCACGCCGTGTTCGTCCAGCGGCGCGTCGTCCCGGCGCTGGGCGGGGAGCC
CGACGAGCGGGTCATCGCCGAGAGCGTCGCGCGGCTGAGGGAGACGCTCGCCGTGTACGAGGCACGGCTGGAGGCCACGC
GCGGGTACCTCGCCGGCGGCGAGGTGAGCCTCGCCGACCTGAGCCACTTCCCGTACACGCGCTACTTCATGGAGATGCCG
TACGAGGTGCCGGTGTTCGGCGCGTACCCTCGCGTGACGGCGTGGTGGGAGCGCCTGCTGACGAGGCCGTCGGTCAGGAA
GGTGGCCGCCATGATGAGCGGCGGCGAGGGTTGATACGTGTGCTGATGCTTGCTACTGTTTTCTTTTTCTTAAAAAAAGA
GAATCATACTCTCTCATTCCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30790.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis