Browse Element(s) Details


OsAffx.2096.1.S1_at

Description tigr:9629.m02631
TID=OsAffx.2096.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2753011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27470OsAffx.21134.1.S1_at11/111+15663396..15664454Ubiquitin family protein
LOC_Os01g27480Os.30790.1.S1_at11/111+15671246..15672275glutathione S-transferase GSTF1, putative, expressed
LOC_Os01g27490Os.2688.1.S1_at10/111+15673218..15674807Leucoanthocyanidin dioxygenase, putative, expressed
LOC_Os01g27500OsAffx.14671.1.S1_at11/111+15677420..15678434hypothetical protein
LOC_Os01g27510OsAffx.23418.2.S1_s_at11/111+15680841..15681245hypothetical protein
LOC_Os01g27520Os.10973.1.S1_at11/111+15683651..15687548Asparaginyl-tRNA synthetase, cytoplasmic 3, putative, expressed
LOC_Os01g27530OsAffx.2096.1.S1_at11/111+15687898..15688817expressed protein
LOC_Os01g27530Os.52368.1.S1_at3/111+15687898..15688817expressed protein
LOC_Os01g27550NANA1+15698128..15703297retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g27560NANA1+15707967..15708876hypothetical protein
LOC_Os01g27570OsAffx.27622.1.S1_x_at10/111+15711763..15712312hypothetical protein
LOC_Os01g27570OsAffx.27622.2.S1_at1/111+15711763..15712312hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2096.1.S1_at--533--1471Chr01:15688694..15688718 (25 bp)
AGCAATCCCGGCACAAACTCATGTT
LOC_Os01g27530
OsAffx.2096.1.S1_at--816--4251Chr01:15688687..15688711 (25 bp)
CCGGCACAAACTCATGTTTCCTATT
LOC_Os01g27530
OsAffx.2096.1.S1_at--231--732Chr03:36328324..36328345 (22 bp)
ATGTTTCCTATTGTTATTGCCCCGT
NONE
OsAffx.2096.1.S1_at--1012--3072Chr03:36328356..36328637 (25 bp)
AATCAGAAGCTGTTGTTGTGGAAGA
NONE
OsAffx.2096.1.S1_at--1134--3051Chr01:15688344..15688368 (25 bp)
AATCTGCGCATGGATTTTGTCTCTG
LOC_Os01g27530
OsAffx.2096.1.S1_at--629--832Chr01:15688335..15688359 (25 bp)
ATGGATTTTGTCTCTGCCGTGCTCT
LOC_Os01g27530
OsAffx.2096.1.S1_at--4--2651Chr01:15688306..15688330 (25 bp)
AACCAAAACCAAGAGCAGGAGCAAT
LOC_Os01g27530
OsAffx.2096.1.S1_at--834--5952Chr05:2678823..2678849 (25 bp)
GAGCAATGCCAAGCCTGAGACAAGC
NONE
OsAffx.2096.1.S1_at--790--3711Chr01:15688097..15688121 (25 bp)
CTACCAATTCCTGTTCTACTCTGAG
LOC_Os01g27530
OsAffx.2096.1.S1_at--885--3151Chr01:15688092..15688116 (25 bp)
AATTCCTGTTCTACTCTGAGCCAAC
LOC_Os01g27530
OsAffx.2096.1.S1_at--1087--4351Chr01:15687958..15687982 (25 bp)
CCAGCCAGCCCGCATGAGAAAATTG
LOC_Os01g27530
Target Sequence 
AGCAATCCCGGCACAAACTCATGTTTCCTATTGTTATTGCCCCGTTGCTGCCAACAATCAGAAGCTGTTGTTGTGGAAGA
GGATGCCAATCTGCGCATGGATTTTGTCTCTGCCGTGCTCTCCAAAACCAAAACCAAGAGCAGGAGCAATGCCAAGCCTG
AGACAAGCAGCAGCAATCCCGGCGCGGCGATGGAGATCGAGAAGCCTGAAGAGGCGGCGCGGCCCGTCACCATGGAGGTG
GACGGGAAGCCCGAGAAGAATGAGGTCTCGAAGAAGGCCAGATGGCGGGGAAGGTCGCCGTGCAGTCCCTGGAGAAGTAC
TACGGCGACCGCGCCTACCAATTCCTGTTCTACTCTGAGCCAACCGCCGCAGCGCATGCGTCCACCCCGCGGCCCGTCGC
CGGCCTCCAAGCTGCTCCCCCGCCGCTCCTCCTCCGTCGCTCGCCGCCCGCGCGCAGCTCTTCCCCCGCCGCACCAGCCA
GCCCGCATGAGAAAATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2096.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis