Browse Element(s) Details


OsAffx.23418.2.S1_s_at

Description tigr:9629.m02629
TID=OsAffx.23418.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2751011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27450OsAffx.20451.1.S1_at1/111+15659363..15660813hypothetical protein
LOC_Os01g27459NANA1+15661976..15662155NA
LOC_Os01g27470OsAffx.21134.1.S1_at11/111+15663396..15664454Ubiquitin family protein
LOC_Os01g27480Os.30790.1.S1_at11/111+15671246..15672275glutathione S-transferase GSTF1, putative, expressed
LOC_Os01g27490Os.2688.1.S1_at10/111+15673218..15674807Leucoanthocyanidin dioxygenase, putative, expressed
LOC_Os01g27500OsAffx.14671.1.S1_at11/111+15677420..15678434hypothetical protein
LOC_Os01g27510OsAffx.23418.2.S1_s_at11/111+15680841..15681245hypothetical protein
LOC_Os01g27520Os.10973.1.S1_at11/111+15683651..15687548Asparaginyl-tRNA synthetase, cytoplasmic 3, putative, expressed
LOC_Os01g27530OsAffx.2096.1.S1_at11/111+15687898..15688817expressed protein
LOC_Os01g27530Os.52368.1.S1_at3/111+15687898..15688817expressed protein
LOC_Os01g27550NANA1+15698128..15703297retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23418.2.S1_s_at--347--4691Chr01:15681185..15681209 (25 bp)
GCGGAGGTGACCACGATGACGGCCT
LOC_Os01g27510
OsAffx.23418.2.S1_s_at--222--1891Chr01:15681173..15681197 (25 bp)
ACGATGACGGCCTTGGGCGTGTCAC
LOC_Os01g27510
OsAffx.23418.2.S1_s_at--181--4051Chr01:15681172..15681196 (25 bp)
CGATGACGGCCTTGGGCGTGTCACC
LOC_Os01g27510
OsAffx.23418.2.S1_s_at--257--1831Chr01:15681138..15681162 (25 bp)
ACGCGCCTACGGGTCTGGCTTGCTG
LOC_Os01g27510
OsAffx.23418.2.S1_s_at--966--7171Chr01:15681126..15681150 (25 bp)
GTCTGGCTTGCTGGGTGACGACAAC
LOC_Os01g27510
OsAffx.23418.2.S1_s_at--934--3911Chr01:15681124..15681148 (25 bp)
CTGGCTTGCTGGGTGACGACAACAC
LOC_Os01g27510
OsAffx.23418.2.S1_s_at--1033--8271Chr01:15681122..15681146 (25 bp)
GGCTTGCTGGGTGACGACAACACGT
LOC_Os01g27510
OsAffx.23418.2.S1_s_at--897--4911Chr01:15681121..15681145 (25 bp)
GCTTGCTGGGTGACGACAACACGTT
LOC_Os01g27510
OsAffx.23418.2.S1_s_at--139--3631Chr01:15681120..15681144 (25 bp)
CTTGCTGGGTGACGACAACACGTTG
LOC_Os01g27510
OsAffx.23418.2.S1_s_at--1104--9111Chr01:15681118..15681142 (25 bp)
TGCTGGGTGACGACAACACGTTGGC
LOC_Os01g27510
OsAffx.23418.2.S1_s_at--121--7691Chr01:15681114..15681138 (25 bp)
GGGTGACGACAACACGTTGGCGGCG
LOC_Os01g27510
Target Sequence 
GCGGAGGTGACCACGATGACGGCCTTGGGCGTGTCACCGCCTCCCCTACGCGCCTACGGGTCTGGCTTGCTGGGTGACGA
CAACACGTTGGCGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23418.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis