Browse Element(s) Details


Os.10973.1.S1_at

Description gb:AK101893.1
DB_XREF= gi:32987102
TID=Os.10973.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10973 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative asparaginyl-tRNA synthetase (B1039D07.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033070O21, full insert sequence.
FL= gb:AK101893.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2752011/11Asparaginyl-tRNA synthetase, cytoplasmic 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27450OsAffx.20451.1.S1_at1/111+15659363..15660813hypothetical protein
LOC_Os01g27459NANA1+15661976..15662155NA
LOC_Os01g27470OsAffx.21134.1.S1_at11/111+15663396..15664454Ubiquitin family protein
LOC_Os01g27480Os.30790.1.S1_at11/111+15671246..15672275glutathione S-transferase GSTF1, putative, expressed
LOC_Os01g27490Os.2688.1.S1_at10/111+15673218..15674807Leucoanthocyanidin dioxygenase, putative, expressed
LOC_Os01g27500OsAffx.14671.1.S1_at11/111+15677420..15678434hypothetical protein
LOC_Os01g27510OsAffx.23418.2.S1_s_at11/111+15680841..15681245hypothetical protein
LOC_Os01g27520Os.10973.1.S1_at11/111+15683651..15687548Asparaginyl-tRNA synthetase, cytoplasmic 3, putative, expressed
LOC_Os01g27530OsAffx.2096.1.S1_at11/111+15687898..15688817expressed protein
LOC_Os01g27530Os.52368.1.S1_at3/111+15687898..15688817expressed protein
LOC_Os01g27550NANA1+15698128..15703297retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g27560NANA1+15707967..15708876hypothetical protein
LOC_Os01g27570OsAffx.27622.1.S1_x_at10/111+15711763..15712312hypothetical protein
LOC_Os01g27570OsAffx.27622.2.S1_at1/111+15711763..15712312hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006421biological_processasparaginyl-tRNA aminoacylation
GO:0006422biological_processaspartyl-tRNA aminoacylation
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0004815molecular_functionaspartate-tRNA ligase activity
GO:0004816molecular_functionasparagine-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10973.1.S1_at--49--1611Chr01:15684921..15684945 (25 bp)
AGCTGCTATGGATGTTCTTGTGCCC
LOC_Os01g27520
Os.10973.1.S1_at--769--5451Chr01:15684571..15684595 (25 bp)
GAACGTCTGGACCTTCTCAAAACAA
LOC_Os01g27520
Os.10973.1.S1_at--952--2211Chr01:15684090..15684114 (25 bp)
ACAAGACGCCGGGTTGCCTTTGGAG
LOC_Os01g27520
Os.10973.1.S1_at--267--10131Chr01:15684062..15684086 (25 bp)
TATGAATGGTACTTGGACCTCCGCC
LOC_Os01g27520
Os.10973.1.S1_at--68--4171Chr01:15684041..15684065 (25 bp)
CGCCGCTTTGGATCTGTCAAGCACA
LOC_Os01g27520
Os.10973.1.S1_at--204--1471Chr01:15683993..15684017 (25 bp)
AGAATGATTCTTTTTGCCACTGGTT
LOC_Os01g27520
Os.10973.1.S1_at--309--6491Chr01:15683935..15683959 (25 bp)
GATACCCAGGGAGGGCTGATCTCTA
LOC_Os01g27520
Os.10973.1.S1_at--2--6511Chr01:15683829..15683853 (25 bp)
GATATATTTCGTGTCAGCTTGGTTG
LOC_Os01g27520
Os.10973.1.S1_at--466--6631Chr01:15683808..15683832 (25 bp)
GTTGTAATAGATGCTCACCATGTAT
LOC_Os01g27520
Os.10973.1.S1_at--250--4411Chr01:15683773..15683797 (25 bp)
GCCACTACAGCATATGAACGACCAA
LOC_Os01g27520
Os.10973.1.S1_at--965--6851Chr01:15683653..15683677 (25 bp)
GTTTGAAGTCATAACCGCTACATTT
LOC_Os01g27520
Target Sequence 
AGCTGCTATGGATGTTCTTGTGCCCAAGGTTGGNGAGTTGGTTGGTGGAAGCCAAAGGGAGGAACGTCTGGACCTTCTCA
AAACAAGGATACAAGACGCCGGGTTGCCTTTGGAGCCATATGAATGGTACTTGGACCTCCGCCGCTTTGGATCTGTCAAG
CACAGTGGTTTTGGTTTGGGTTTTGAAAGAATGATTCTTTTTGCCACTGGTTTGGANAACATCAGAGATGTCATCCCCTT
CCCTAGATACCCAGGGAGGGCTGATCTCTAAAATAACCAGAGAAAGCTGGATTCTAAAGTTCTTCTCGCTGTCCTGTTAG
CTCCTCAATTTCAGGTNTACAAATGTGCACTGATATATTTCGTGTCAGCTTGGTTGTAATAGATGCTCACCATGTATTTA
GTTATTTGCCACTACAGCATATGAACGACCAATTTACTCATTTTTGCGATAGTTGAACATTTTAGAAGTTTTGTTCAAAG
CAAGATCTATTTGTACTCGTTAATTGTTACAAAATGTGGTTTTGCAGGTTTGAAGTCATAACCGCTACATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10973.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis