Browse Element(s) Details


OsAffx.27622.1.S1_x_at

Description tigr:9632.m03113
TID=OsAffx.27622.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2757010/11hypothetical protein
LOC_Os04g326109/11expressed protein
LOC_Os06g137808/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27520Os.10973.1.S1_at11/111+15683651..15687548Asparaginyl-tRNA synthetase, cytoplasmic 3, putative, expressed
LOC_Os01g27530OsAffx.2096.1.S1_at11/111+15687898..15688817expressed protein
LOC_Os01g27530Os.52368.1.S1_at3/111+15687898..15688817expressed protein
LOC_Os01g27550NANA1+15698128..15703297retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g27560NANA1+15707967..15708876hypothetical protein
LOC_Os01g27570OsAffx.27622.1.S1_x_at10/111+15711763..15712312hypothetical protein
LOC_Os01g27570OsAffx.27622.2.S1_at1/111+15711763..15712312hypothetical protein
LOC_Os01g27580OsAffx.8898.1.S1_at11/111+15714319..15715693transposon protein, putative, Pong sub-class
LOC_Os01g27590Os.28858.1.S1_at11/111+15716613..15718906transposon protein, putative, Pong sub-class, expressed
LOC_Os01g27600Os.31536.1.S1_at11/111+15720304..15722634expressed protein
LOC_Os01g27620OsAffx.2097.1.S1_at10/111+15732147..15733119hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27622.1.S1_x_at--149--4572Chr04:19454492..19454954 (25 bp)
GCGCCCTCGCAGTTACATAGTTCAA
NONE
OsAffx.27622.1.S1_x_at--18--4552Chr04:19454490..19454952 (25 bp)
GCCCTCGCAGTTACATAGTTCAAGT
NONE
OsAffx.27622.1.S1_x_at--241--5033Chr06:7641404..7641426 (23 bp)
GCAGTTACATAGTTCAAGTCGTCAT
LOC_Os06g13780
OsAffx.27622.1.S1_x_at--1127--10493Chr06:7641414..7641438 (25 bp)
TTCAAGTCGTCATTCATTACTTCGA
LOC_Os06g13780
OsAffx.27622.1.S1_x_at--297--1153Chr06:7641418..7641442 (25 bp)
AGTCGTCATTCATTACTTCGACAAA
LOC_Os06g13780
OsAffx.27622.1.S1_x_at--211--10473Chr06:7641430..7641454 (25 bp)
TTACTTCGACAAACAGTCTGCCGAG
LOC_Os06g13780
OsAffx.27622.1.S1_x_at--339--10633Chr06:7641434..7641458 (25 bp)
TTCGACAAACAGTCTGCCGAGTTCA
LOC_Os06g13780
OsAffx.27622.1.S1_x_at--81--2413Chr06:7641440..7641464 (25 bp)
AAACAGTCTGCCGAGTTCATCAACT
LOC_Os06g13780
OsAffx.27622.1.S1_x_at--655--7153Chr06:7641445..7641469 (25 bp)
GTCTGCCGAGTTCATCAACTCAGCT
LOC_Os06g13780
OsAffx.27622.1.S1_x_at--685--4073Chr06:7641451..7641475 (25 bp)
CGAGTTCATCAACTCAGCTGCTGGG
LOC_Os06g13780
OsAffx.27622.1.S1_x_at--947--3431Chr04:19453568..19453592 (25 bp)
CAGTAATATATGCAACACAAAGTAT
LOC_Os04g32610
Target Sequence 
GCGCCCTCGCAGTTACATAGTTCAAGTCGTCATTCATTACTTCGACAAACAGTCTGCCGAGTTCATCAACTCAGCTGCTG
GGGCCATCACCGTCTCCTACNTCATGCAGCTACTGACTGGNNNNNTNNNNANNNANNNTTNAGCAGTAATATATGCAACA
CAAAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27622.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis