Browse Element(s) Details


Os.28858.1.S1_at

Description gb:AK110973.1
DB_XREF= gi:32996182
TID=Os.28858.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28858 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1039D07.22 (B1039D07.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-C01, full insert sequence.
FL= gb:AK110973.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2759011/11transposon protein, putative, Pong sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27550NANA1+15698128..15703297retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g27560NANA1+15707967..15708876hypothetical protein
LOC_Os01g27570OsAffx.27622.1.S1_x_at10/111+15711763..15712312hypothetical protein
LOC_Os01g27570OsAffx.27622.2.S1_at1/111+15711763..15712312hypothetical protein
LOC_Os01g27580OsAffx.8898.1.S1_at11/111+15714319..15715693transposon protein, putative, Pong sub-class
LOC_Os01g27590Os.28858.1.S1_at11/111+15716613..15718906transposon protein, putative, Pong sub-class, expressed
LOC_Os01g27600Os.31536.1.S1_at11/111+15720304..15722634expressed protein
LOC_Os01g27620OsAffx.2097.1.S1_at10/111+15732147..15733119hypothetical protein
LOC_Os01g27630Os.16500.1.S1_at10/111+15737644..15738926Glutathione S-transferase I, putative, expressed
LOC_Os01g27640OsAffx.24866.1.S1_at10/111+15739981..15742657retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28858.1.S1_at--664--9831Chr01:15717146..15717170 (25 bp)
TAAAGGGTTCCAGCAGTAGTGATGA
LOC_Os01g27590
Os.28858.1.S1_at--288--1011Chr01:15717110..15717134 (25 bp)
AGGATTCTCCTATTGAGCTAGACAA
LOC_Os01g27590
Os.28858.1.S1_at--1007--8051Chr01:15716917..15716941 (25 bp)
GGAGACTTATAACAACCTCGTTTCA
LOC_Os01g27590
Os.28858.1.S1_at--144--2471Chr01:15716907..15716931 (25 bp)
AACAACCTCGTTTCACAGGATACAA
LOC_Os01g27590
Os.28858.1.S1_at--182--5131Chr01:15716859..15716883 (25 bp)
GCACAGCGAGCTATGATGATGAAGT
LOC_Os01g27590
Os.28858.1.S1_at--179--5191Chr01:15716839..15716863 (25 bp)
GAAGTGTCTTATGAAGGCCCTTTTT
LOC_Os01g27590
Os.28858.1.S1_at--197--8971Chr01:15716828..15716852 (25 bp)
TGAAGGCCCTTTTTCCTGAAACTGT
LOC_Os01g27590
Os.28858.1.S1_at--56--6891Chr01:15716795..15716819 (25 bp)
GTATTTCTTATCTGTGTAGTTCTGA
LOC_Os01g27590
Os.28858.1.S1_at--990--10331Chr01:15716620..15716644 (25 bp)
TTTAGCACTTGTAGTAGCCATATAT
LOC_Os01g27590
Os.28858.1.S1_at--57--271Chr01:15716725..15716749 (25 bp)
ATATGAACCTCAGCCAGTTCTGGTA
LOC_Os01g27590
Os.28858.1.S1_at--52--6851Chr01:15716688..15716712 (25 bp)
GTTTCTGCTTATTTAGTATTCTGTG
LOC_Os01g27590
Target Sequence 
TAAAGGGTTCCAGCAGTAGTGATGATGGTCACTCAAAGGATTCTCCTATTGAGCTAGACAAATTTGATAGATACAGTAAA
TTTTAGGAGGCAAACAATGAGAAGCGTATGAAGCTATTGGACAGGCAAGAGAAGATAGCTTCTGAGAAGCTAGAGGCCAC
AAAAATTGCCCACCTTACAGCACAAGAGTACAAAGAAGGAAAGAAGCTTGATAAAGAGACAAAGATGATGGAGACTTATA
ACAACCTCGTTTCACAGGATACAAGTTCAATGTCCGATGAGGAAAAGGCACAGCGAGCTATGATGATGAAGTGTCTTATG
AAGGCCCTTTTTCCTGAAACTGTTTGAGAAGGTATTTCTTATCTGTGTAGTTCTGAAATTTAGCACTTGTAGTTCTGAAA
TTTAGCACTTGTAGTAGCCATATATGAACCTCAGCCAGTTCTGGTATGAAGATATGAAGTTTCTGCTTATTTAGTATTCT
GTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28858.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis