Browse Element(s) Details


Os.16500.1.S1_at

Description gb:BI803090
DB_XREF= gi:16575794
DB_XREF=H100C05
CLONE=H100C05
TID=Os.16500.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.16500 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative glutathione S-transferase (B1039D07.26), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2763010/11Glutathione S-transferase I, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27580OsAffx.8898.1.S1_at11/111+15714319..15715693transposon protein, putative, Pong sub-class
LOC_Os01g27590Os.28858.1.S1_at11/111+15716613..15718906transposon protein, putative, Pong sub-class, expressed
LOC_Os01g27600Os.31536.1.S1_at11/111+15720304..15722634expressed protein
LOC_Os01g27620OsAffx.2097.1.S1_at10/111+15732147..15733119hypothetical protein
LOC_Os01g27630Os.16500.1.S1_at10/111+15737644..15738926Glutathione S-transferase I, putative, expressed
LOC_Os01g27640OsAffx.24866.1.S1_at10/111+15739981..15742657retrotransposon protein, putative, unclassified
LOC_Os01g27650OsAffx.23420.1.S1_at11/111+15745777..15747984pentatricopeptide, putative
LOC_Os01g27660OsAffx.10637.4.S1_s_at5/111+15753689..15757454transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27660OsAffx.10637.1.S1_s_at5/111+15753689..15757454transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27660OsAffx.10637.3.S1_s_at3/111+15753689..15757454transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27660OsAffx.10637.2.S1_at1/111+15753689..15757454transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27670OsAffx.32056.1.S1_x_at5/111+15758784..15761808transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27670OsAffx.32056.1.S1_at3/111+15758784..15761808transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0006952biological_processdefense response
GO:0009407biological_processtoxin catabolism
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16500.1.S1_at--651--4811Chr01:15738013..15738037 (25 bp)
GCTCTTCAGGATGGTGATTTAATTC
LOC_Os01g27630
Os.16500.1.S1_at--1005--9731Chr01:15738032..15738362 (25 bp)
TAATTCTTTTTGAGTCACGTGCAAT
LOC_Os01g27630
Os.16500.1.S1_at--1093--3991Chr01:15738355..15738379 (25 bp)
CGTGCAATTTCGAAGTACGTGCTTC
LOC_Os01g27630
Os.16500.1.S1_at--647--9591Chr01:15738503..15738527 (25 bp)
TCATCCTCCCTGTGTATTTCGGTGG
LOC_Os01g27630
Os.16500.1.S1_at--682--1051Chr01:15738584..15738608 (25 bp)
AGGTGTATGAAGAGCGTCTGTGCAA
LOC_Os01g27630
Os.16500.1.S1_at--1015--4631Chr01:15738597..15738621 (25 bp)
GCGTCTGTGCAAGTTCAGGTACTTA
LOC_Os01g27630
Os.16500.1.S1_at--313--9891Chr01:15738616..15738640 (25 bp)
TACTTAGCTGGAGACTTCCTGAGCC
LOC_Os01g27630
Os.16500.1.S1_at--1113--10631Chr01:15738658..15738682 (25 bp)
TTCCCAACTGCGTACTACCTGCTGG
LOC_Os01g27630
Os.16500.1.S1_at--704--6291Chr01:15738706..15738730 (25 bp)
GATGAGTTCCCTCTTGTGAAGGCTT
LOC_Os01g27630
Os.16500.1.S1_at--480--4931NONE
GCTTGTTGTGATGATCCCTTGTGAT
NONE
Os.16500.1.S1_at--293--551Chr01:15738833..15738854 (22 bp)
ATCCCTTGTGATCTCTCTAAAATGA
LOC_Os01g27630
Target Sequence 
GCTCTTCAGGATGGTGATTTAATTCTTTTTGAGTCACGTGCAATTTCGAAGTACGTGCTTCGTAAGAACANCTCTGAACT
CCTGAAGGNAGCNACNACCTTTCTGACGCTNCCAAGGTTGATGTGTGGCTGGAAGCTGAGTCACNCCNTTTCGATGAGCC
CATGTCCNGTGGTCATCTACCNAATGCCTCATCCTCCCTGTGTATTTCGGTGGNCNAAACCGATGCGAAGGTTGTGGAAG
AGAATCTGGAGAAGCTCAAGAAGACANTTTCAGGTGTATGAAGAGCGTCTGTGCAAGTTCAGGTACTTAGCTGGAGACTT
CCTGAGCCNTTGCGGATCTGAGCCANTTTCCCAACTGCGTACTACCTGCTGGCCACCCCNTCATGCTGCTATGCTNGATG
AGTTCCCTCTTGTGAAGGCTTGGATCGATGGCANTGTTGGCCANGGCCGTCTGTCNAGAAGGTCATAGAGATGATGAAGG
CACACTGCCTAGAAAAAAAAAATCGTGTTGCTTGTTGTGATGATCCCTTGTGATCTCTCTAAAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16500.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis