Browse Element(s) Details


Os.52368.1.S1_at

Description gb:AK066683.1
DB_XREF= gi:32976701
TID=Os.52368.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52368 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013072G24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013072G24, full insert sequence.
FL= gb:AK066683.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g275303/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27470OsAffx.21134.1.S1_at11/111+15663396..15664454Ubiquitin family protein
LOC_Os01g27480Os.30790.1.S1_at11/111+15671246..15672275glutathione S-transferase GSTF1, putative, expressed
LOC_Os01g27490Os.2688.1.S1_at10/111+15673218..15674807Leucoanthocyanidin dioxygenase, putative, expressed
LOC_Os01g27500OsAffx.14671.1.S1_at11/111+15677420..15678434hypothetical protein
LOC_Os01g27510OsAffx.23418.2.S1_s_at11/111+15680841..15681245hypothetical protein
LOC_Os01g27520Os.10973.1.S1_at11/111+15683651..15687548Asparaginyl-tRNA synthetase, cytoplasmic 3, putative, expressed
LOC_Os01g27530OsAffx.2096.1.S1_at11/111+15687898..15688817expressed protein
LOC_Os01g27530Os.52368.1.S1_at3/111+15687898..15688817expressed protein
LOC_Os01g27550NANA1+15698128..15703297retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g27560NANA1+15707967..15708876hypothetical protein
LOC_Os01g27570OsAffx.27622.1.S1_x_at10/111+15711763..15712312hypothetical protein
LOC_Os01g27570OsAffx.27622.2.S1_at1/111+15711763..15712312hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52368.1.S1_at--1060--1431Chr03:36328226..36328247 (22 bp)
AGAACTGCTGGATCACATCGGGCGG
NONE
Os.52368.1.S1_at--830--6212Chr03:36328394..36328418 (25 bp)
GAGGCCTTAGCTGTACTTGTAGTTT
NONE
Os.52368.1.S1_at--864--7911Chr03:36328482..36328506 (25 bp)
GGTTGTTTGTCTGTCTGTTTGATGA
NONE
Os.52368.1.S1_at--55--4332Chr03:36328514..36328538 (25 bp)
GAATTGGCCCCTGTTAAAGACTAAT
NONE
Os.52368.1.S1_at--352--3572Chr03:36328539..36328563 (25 bp)
CTTCAGTAAACATAGGCCCGCTTGG
NONE
Os.52368.1.S1_at--1016--10391Chr03:36328601..36328625 (25 bp)
TTTTGCTTGCTTGCCTACCAAACGA
NONE
Os.52368.1.S1_at--110--831Chr03:36328654..36328678 (25 bp)
ATGGTAGTTTTGCTGTTGCTGGAAA
NONE
Os.52368.1.S1_at--221--5251Chr03:36328815..36328839 (25 bp)
GAATCATCAGCGCAGCTGGCTTTGC
NONE
Os.52368.1.S1_at--747--2311Chr03:36328854..36328878 (25 bp)
AAAGGTCGCCTACGTGCTTGCTGAA
NONE
Os.52368.1.S1_at--426--9071Chr03:36328868..36328892 (25 bp)
TGCTTGCTGAACTGTACTACTCTGT
NONE
Os.52368.1.S1_at--82--9831Chr03:36328966..36328990 (25 bp)
TAAACCCTCCTCTTTATAAGTGACG
NONE
Target Sequence 
AGAACTGCTGGATCACATCGGGCGGCGCTTCTGAGGCCTTAGCTGTACTTGTAGTTTGATGAAAGTGGGAGGAGATTGGA
AGGAAGCAGCCGTTAAGGCAGAATTGATCATCATTGTGTTGGTTGTTTGTCTGTCTGTTTGATGACGGGAAGGAATTGGC
CCCTGTTAAAGACTAATCTTCAGTAAACATAGGCCCGCTTGGTTTGGTTTTTAAGGAGAGGAACCAGGAATGGATTGTCT
TTTGCTTGCTTGCCTACCAAACGAAACGGTGGAAGAGGATGCCAATCTGCGCATGGTAGTTTTGCTGTTGCTGGAAAAGG
GGTATCAGGCAAAGATGCAGAACAGAGATGGATGCATGGGTGAGATAAGAATCAGAATCATCAGCGCAGCTGGCTTTGCG
ACCCAGAAGCCAGAAAGGTCGCCTACGTGCTTGCTGAACTGTACTACTCTGTACATATTCTGATATGCATGCATACGTAG
TACTACAATACAAACGTGTTGCATACAGTGTACTACGACATACTATAAACCCTCCTCTTTATAAGTGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52368.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis