Browse Element(s) Details


Os.6046.1.S1_at

Description gb:AK121077.1
DB_XREF= gi:37990700
TID=Os.6046.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6046 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0041L14.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023062F04, full insert sequence.
FL= gb:AK121077.1 gb:AK119654.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4206011/11expressed protein
LOC_Os10g123007/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g42040NANA6+25244900..25245349hypothetical protein
LOC_Os06g42050OsAffx.18176.2.S1_at10/116+25258476..25260162hypothetical protein
LOC_Os06g42060Os.6046.1.S1_at11/116+25268139..25269606expressed protein
LOC_Os06g42060Os.6046.1.S2_at11/116+25268139..25269606expressed protein
LOC_Os06g42070OsAffx.28060.1.S1_at10/116+25270747..25272847hypothetical protein
LOC_Os06g42080NANA6+25277370..25279203retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g42090NANA6+25279478..25282985transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g42100NANA6+25288296..25289486hypothetical protein
LOC_Os06g42110OsAffx.28061.1.S1_at11/116+25290574..25291059hypothetical protein
LOC_Os06g42120Os.56146.1.S1_at10/116+25291063..25292336Sulfotransferase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6046.1.S1_at--983--7092Chr10:6611588..6611612 (25 bp)
GTCACGATGACGAGCTATTTCTACC
NONE
Os.6046.1.S1_at--714--4652Chr10:6611486..6611510 (25 bp)
GCGTCGACCATCGTGCTGCGAAGGT
LOC_Os10g12300
Os.6046.1.S1_at--533--7312Chr10:6611474..6611498 (25 bp)
GTGCTGCGAAGGTTAGCGCATCCTC
LOC_Os10g12300
Os.6046.1.S1_at--698--8072Chr10:6611402..6611426 (25 bp)
GGAGCACCGCGTATACAGCGAGCGC
LOC_Os10g12300
Os.6046.1.S1_at--595--4392Chr10:6611373..6611397 (25 bp)
GCCAGCCTTAGGTTGGTCGCGGCAA
LOC_Os10g12300
Os.6046.1.S1_at--236--10772Chr10:6611361..6611385 (25 bp)
TTGGTCGCGGCAATTACGGCGTTGC
LOC_Os10g12300
Os.6046.1.S1_at--136--1892Chr10:6611288..6611312 (25 bp)
ACGATTAGCGCCCTGGCCAAGAAGG
LOC_Os10g12300
Os.6046.1.S1_at--581--2952Chr10:6611267..6611291 (25 bp)
AAGGCGAGCAGACCCGATGGTCAAC
LOC_Os10g12300
Os.6046.1.S1_at--1109--8011Chr06:25268840..25268864 (25 bp)
GGAGGATAGCTTGTTATGCTTTCAA
LOC_Os06g42060
Os.6046.1.S1_at--577--632Chr10:6611143..6611167 (25 bp)
ATGCTTTCAAACTTAGCTCGCTAAG
NONE
Os.6046.1.S1_at--1082--7452Chr10:6610875..6610899 (25 bp)
GTGTGCATAAACTTGTCACTTTGTC
NONE
Target Sequence 
GTCACGATGACGAGCTATTTCTACCCNTCCGTGCCGTCTCTCTACCCCCTCCGCCTCCACTTGCTGCGGCCGCGCGGGTA
CCTGCCGAGCACGGCGTCTCCGGCGTCGACCATCGTGCTGCGAAGGTTAGCGCATCCTCCCTCGGCGAGCGCCCTGGCGA
CAAGCGCCGGACCACCATCGCCACCCGGAGCACCGCGTATACAGCGAGCGCGCGCGCCAGCCTTAGGTTGGTCGCGGCAA
TTACGGCGTTGCGCGCGACAGCGACCCCCGCGACGAGCCTGCGCGCGTCGGCCGAGCGTGACGATTAGCGCCCTGGCCAA
GAAGGCGAGCAGACCCGATGGTCAACCANTTGTGTGAGTTATGTCTTTTNNTTGTTATATGAAGGAATTGTGTATCATAT
TTTCAGGTGCCCTGTNGCAATTGAAGTAATGGAGGATAGCTTGTTATGCTTTCAAACTTAGCTCGCTAAGTGTGCATAAA
CTTGTCACTTTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6046.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis