Browse Element(s) Details


OsAffx.21790.1.S1_at

Description gb:NM_190316.1
DB_XREF= gi:34907715
GEN=P0035F12.18
TID=OsAffx.21790.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative 4-coumarate-CoA ligase (P0035F12.18), mRNA.
PROD=putative 4-coumarate-CoA ligase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6754011/11AMP-binding enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67510Os.18205.1.S1_at10/111+39565700..39570792Protein recA, putative, expressed
LOC_Os01g67520Os.49594.1.S1_at11/111+39571459..39573977VTC2, putative, expressed
LOC_Os01g67530Os.5174.1.S1_at11/111+39579852..39583588AMP-binding enzyme family protein, expressed
LOC_Os01g67540OsAffx.21790.1.S1_at11/111+39584856..39588099AMP-binding enzyme family protein, expressed
LOC_Os01g67550Os.54247.1.S1_at6/111+39589761..39593236FAD binding domain containing protein
LOC_Os01g67560Os.14630.1.S1_at11/111+39593630..39596178Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os01g67560Os.14630.2.S1_at11/111+39593630..39596178Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os01g67570Os.14855.1.S1_at11/111+39597394..39601841expressed protein
LOC_Os01g67580Os.33212.2.S1_at11/111+39603067..39609733ABC transporter family protein, expressed
LOC_Os01g67580Os.50194.1.S1_at1/111+39603067..39609733ABC transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009698biological_processphenylpropanoid metabolism
GO:0005777cellular_componentperoxisome
GO:0004321molecular_functionfatty-acyl-CoA synthase activity
GO:0016207molecular_function4-coumarate-CoA ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21790.1.S1_at--361--8671Chr01:39587197..39587221 (25 bp)
TGTGGGTGATCCTGAAGCAACTGCA
LOC_Os01g67540
OsAffx.21790.1.S1_at--726--4031Chr01:39587226..39587250 (25 bp)
CGATCACTCCAGACGGCTGGTTGAA
LOC_Os01g67540
OsAffx.21790.1.S1_at--510--6251Chr01:39587279..39587303 (25 bp)
GATGGTTATCTCTACGTTGTTGATC
LOC_Os01g67540
OsAffx.21790.1.S1_at--1043--4711Chr01:39587491..39587515 (25 bp)
GCTGGAGCACATTCTACAGTCTCGT
LOC_Os01g67540
OsAffx.21790.1.S1_at--680--1151Chr01:39587508..39587532 (25 bp)
AGTCTCGTCCTGAAATCGCTGATGC
LOC_Os01g67540
OsAffx.21790.1.S1_at--231--631Chr01:39587529..39587678 (25 bp)
ATGCTGCTGTTGTCCCATATCCTGA
LOC_Os01g67540
OsAffx.21790.1.S1_at--530--7711Chr01:39587724..39587748 (25 bp)
GGGTGCATACCTTACCGAGCAACAA
LOC_Os01g67540
OsAffx.21790.1.S1_at--565--2451Chr01:39587744..39587768 (25 bp)
AACAAGTCATGAACTGCGTCGCTAA
LOC_Os01g67540
OsAffx.21790.1.S1_at--191--4831Chr01:39587764..39587992 (25 bp)
GCTAAACATGTTGCGCCCTACAAGA
LOC_Os01g67540
OsAffx.21790.1.S1_at--69--4171Chr01:39587998..39588022 (25 bp)
CGCCGTGTGGCTTTTGTCAATGCAA
LOC_Os01g67540
OsAffx.21790.1.S1_at--662--1291Chr01:39588044..39588068 (25 bp)
AGATCCTGAGACGAGAGCTTGTACT
LOC_Os01g67540
Target Sequence 
TGTGGGTGATCCTGAAGCAACTGCAGCAACGATCACTCCAGACGGCTGGTTGAAAACTGGTGACCTCTGCTACTTCAACG
AAGATGGTTATCTCTACGTTGTTGATCGATTGAAGGAGCTGATAAAATACAAGGGATATCAGGTACCACCAGCTGAGCTG
GAGCACATTCTACAGTCTCGTCCTGAAATCGCTGATGCTGCTGTTGTCCCATATCCTGATGAAGAAGCTGGGCAACTGCC
AATGGCTTTTGTAGTGAGGCAACCGGGTGCATACCTTACCGAGCAACAAGTCATGAACTGCGTCGCTAAACATGTTGCGC
CCTACAAGAAAGTGCGCCGTGTGGCTTTTGTCAATGCAATACCGAAATCTCCTGCAGGGAAGATCCTGAGACGAGAGCTT
GTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21790.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis