Browse Element(s) Details


Os.14630.1.S1_at

Description gb:AK070266.1
DB_XREF= gi:32980290
TID=Os.14630.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14630 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023045G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023045G07, full insert sequence.
FL= gb:AK070266.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6756011/11Uncharacterized BCR, COG1963 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67510Os.18205.1.S1_at10/111+39565700..39570792Protein recA, putative, expressed
LOC_Os01g67520Os.49594.1.S1_at11/111+39571459..39573977VTC2, putative, expressed
LOC_Os01g67530Os.5174.1.S1_at11/111+39579852..39583588AMP-binding enzyme family protein, expressed
LOC_Os01g67540OsAffx.21790.1.S1_at11/111+39584856..39588099AMP-binding enzyme family protein, expressed
LOC_Os01g67550Os.54247.1.S1_at6/111+39589761..39593236FAD binding domain containing protein
LOC_Os01g67560Os.14630.1.S1_at11/111+39593630..39596178Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os01g67560Os.14630.2.S1_at11/111+39593630..39596178Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os01g67570Os.14855.1.S1_at11/111+39597394..39601841expressed protein
LOC_Os01g67580Os.33212.2.S1_at11/111+39603067..39609733ABC transporter family protein, expressed
LOC_Os01g67580Os.50194.1.S1_at1/111+39603067..39609733ABC transporter family protein, expressed
LOC_Os01g67590Os.14090.1.S1_a_at11/111+39616212..39623444Peptidase family M3 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14630.1.S1_at--179--8551Chr01:39593963..39593987 (25 bp)
TGGAGCTTTGCTTGGGTCTATGCTA
LOC_Os01g67560
Os.14630.1.S1_at--795--7811Chr01:39593949..39593973 (25 bp)
GGTCTATGCTAGCAACAGCAGGGCA
LOC_Os01g67560
Os.14630.1.S1_at--15--5011Chr01:39593932..39593956 (25 bp)
GCAGGGCAAATGTTCCTTGTAGTAT
LOC_Os01g67560
Os.14630.1.S1_at--878--6691Chr01:39593921..39593945 (25 bp)
GTTCCTTGTAGTATCAGGTTCTGTA
LOC_Os01g67560
Os.14630.1.S1_at--862--2791Chr01:39593833..39593857 (25 bp)
AAGAGGCTTCTCCAGTGTCCTGTCA
LOC_Os01g67560
Os.14630.1.S1_at--555--7451Chr01:39593819..39593843 (25 bp)
GTGTCCTGTCACTTAGGTATTGGTA
LOC_Os01g67560
Os.14630.1.S1_at--993--4731Chr01:39593767..39593791 (25 bp)
GCTGTTGAAGTTTTGACGGCACGTG
LOC_Os01g67560
Os.14630.1.S1_at--1039--8931Chr01:39593754..39593778 (25 bp)
TGACGGCACGTGATACATGTATGTT
LOC_Os01g67560
Os.14630.1.S1_at--694--9891Chr01:39593720..39593744 (25 bp)
TACTTCTCAGGATTTTTGTACAGAA
LOC_Os01g67560
Os.14630.1.S1_at--465--10611Chr01:39593689..39593713 (25 bp)
TTCGATAACTTCATTATTCTGGTGA
LOC_Os01g67560
Os.14630.1.S1_at--387--6651Chr01:39593636..39593660 (25 bp)
GTTGTTGATCTACCATTTTGTTATA
LOC_Os01g67560
Target Sequence 
TGGAGCTTTGCTTGGGTCTATGCTAGCAACAGCAGGGCAAATGTTCCTTGTAGTATCAGGTTCTGTATGATGCTGTGTTT
GAAGGTGGATGGGAATTGCTAGCATTTGAANGGGGACTTGAGAAGAAGAAGAAGAGGCTTCTCCAGTGTCCTGTCACTTA
GGTATTGGTAAGATTTGTAACAATGAGATGTTGTGGTGCTGTTGAAGTTTTGACGGCACGTGATACATGTATGTTCAGGT
GATGNTACTTCTCAGGATTTTTGTACAGAATATTTGNTTCGATAACTTCATTATTCTGGTGAAATCTAAAATGTGAGTAT
GTCAGTGATGGTTGTTGATCTACCATTTTGTTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14630.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis