Browse Element(s) Details


OsAffx.13122.2.S1_at

Description tigr:9629.m06722
TID=OsAffx.13122.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6762010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67580Os.33212.2.S1_at11/111+39603067..39609733ABC transporter family protein, expressed
LOC_Os01g67580Os.50194.1.S1_at1/111+39603067..39609733ABC transporter family protein, expressed
LOC_Os01g67590Os.14090.1.S1_a_at11/111+39616212..39623444Peptidase family M3 containing protein, expressed
LOC_Os01g67600OsAffx.23960.1.S1_s_at11/111+39623837..39626634esterase, putative, expressed
LOC_Os01g67600Os.48005.1.S1_x_at11/111+39623837..39626634esterase, putative, expressed
LOC_Os01g67610OsAffx.11775.1.S1_at11/111+39629006..39630045hypothetical protein
LOC_Os01g67610OsAffx.11775.2.S1_at10/111+39629006..39630045hypothetical protein
LOC_Os01g67610OsAffx.11775.1.S1_x_at10/111+39629006..39630045hypothetical protein
LOC_Os01g67620OsAffx.13122.2.S1_at10/111+39632362..39633060hypothetical protein
LOC_Os01g67620OsAffx.22604.1.S1_x_at1/111+39632362..39633060hypothetical protein
LOC_Os01g67630OsAffx.21788.1.S1_at11/111+39634312..39637150POT family protein, expressed
LOC_Os01g67630OsAffx.21788.1.S1_x_at11/111+39634312..39637150POT family protein, expressed
LOC_Os01g67630OsAffx.21788.2.S1_x_at2/111+39634312..39637150POT family protein, expressed
LOC_Os01g67640OsAffx.21788.2.S1_x_at11/111+39639579..39642540POT family protein, expressed
LOC_Os01g67640OsAffx.21788.1.S1_x_at1/111+39639579..39642540POT family protein, expressed
LOC_Os01g67640OsAffx.24785.1.S1_x_at1/111+39639579..39642540POT family protein, expressed
LOC_Os01g67650OsAffx.23961.1.S1_s_at11/111+39646238..39647836GRAS family transcription factor containing protein, expressed
LOC_Os01g67650OsAffx.23961.2.S1_s_at8/111+39646238..39647836GRAS family transcription factor containing protein, expressed
LOC_Os01g67660OsAffx.9591.1.S1_x_at11/111+39648542..39650049hypothetical protein
LOC_Os01g67660OsAffx.9591.1.S1_at11/111+39648542..39650049hypothetical protein
LOC_Os01g67660OsAffx.21787.3.S1_at10/111+39648542..39650049hypothetical protein
LOC_Os01g67670OsAffx.23961.1.S1_s_at11/111+39651207..39652299GRAS family transcription factor containing protein
LOC_Os01g67670OsAffx.23961.2.S1_s_at11/111+39651207..39652299GRAS family transcription factor containing protein
LOC_Os01g67680OsAffx.21787.3.S1_at3/111+39655654..39656466hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13122.2.S1_at--684--4271NONE
CCTGCCACGTCGTACTACAGAGGAT
NONE
OsAffx.13122.2.S1_at--794--3831Chr01:39632567..39632591 (25 bp)
CTGAATTGGAGAGTGCTGCGTGCAT
LOC_Os01g67620
OsAffx.13122.2.S1_at--572--7311Chr01:39632555..39632579 (25 bp)
GTGCTGCGTGCATTGAACTACTGAT
LOC_Os01g67620
OsAffx.13122.2.S1_at--491--2531Chr01:39632540..39632564 (25 bp)
AACTACTGATATGTGCGAATGGCAA
LOC_Os01g67620
OsAffx.13122.2.S1_at--69--8211Chr01:39632513..39632537 (25 bp)
GGCAACGTTGTAGCGGGTACGCTTT
LOC_Os01g67620
OsAffx.13122.2.S1_at--49--9991Chr01:39632503..39632527 (25 bp)
TAGCGGGTACGCTTTCCTAATTAAG
LOC_Os01g67620
OsAffx.13122.2.S1_at--309--2311Chr01:39632477..39632501 (25 bp)
AAAGGCCAGGTCAAGTGGTCTGCAT
LOC_Os01g67620
OsAffx.13122.2.S1_at--1152--3211Chr01:39632466..39632490 (25 bp)
CAAGTGGTCTGCATTTTTCATGATA
LOC_Os01g67620
OsAffx.13122.2.S1_at--212--2151Chr01:39632434..39632458 (25 bp)
ACAGAACTTCCAGCCTCATTGCTTG
LOC_Os01g67620
OsAffx.13122.2.S1_at--923--1671Chr01:39632423..39632447 (25 bp)
AGCCTCATTGCTTGCCCATATTTCC
LOC_Os01g67620
OsAffx.13122.2.S1_at--38--9271Chr01:39632401..39632425 (25 bp)
TCCTGATAAGTCAAAATGGCTGCCC
LOC_Os01g67620
Target Sequence 
CCTGCCACGTCGTACTACAGAGGATCTGAATTGGAGAGTGCTGCGTGCATTGAACTACTGATATGTGCGAATGGCAAGGG
GCAACGTTGTAGCGGGTACGCTTTCCTAATTAAGAAAAGGCCAGGTCAAGTGGTCTGCATTTTTCATGATAAAATTTCAC
AGAACTTCCAGCCTCATTGCTTGCCCATATTTCCTGATAAGTCAAAATGGCTGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13122.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis