Browse Element(s) Details


Os.9904.1.S1_x_at

Description gb:AK068432.1
DB_XREF= gi:32978450
TID=Os.9904.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9904 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ABC transporter-like protein (B1065G12.32), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013153C13, full insert sequence.
FL= gb:AK068432.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6772011/11ABC1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67690NANA1+39663660..39668006retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g67700OsAffx.23962.1.S1_at11/111+39672282..39672935hypothetical protein
LOC_Os01g67710OsAffx.21785.2.S1_at9/111+39676432..39678264hypothetical protein
LOC_Os01g67710OsAffx.21785.1.S1_at1/111+39676432..39678264hypothetical protein
LOC_Os01g67710Os.53962.1.S1_at1/111+39676432..39678264hypothetical protein
LOC_Os01g67720Os.37837.1.A1_at11/111+39684313..39689720ABC1 family protein, expressed
LOC_Os01g67720Os.9904.2.S1_x_at11/111+39684313..39689720ABC1 family protein, expressed
LOC_Os01g67720Os.9904.1.S1_x_at11/111+39684313..39689720ABC1 family protein, expressed
LOC_Os01g67730Os.16682.2.S1_x_at9/111+39690092..396923101-imidazole-4-carboxamide isomerase, putative, expressed
LOC_Os01g67730Os.16682.1.S1_at8/111+39690092..396923101-imidazole-4-carboxamide isomerase, putative, expressed
LOC_Os01g67740Os.48518.1.S1_at11/111+39692769..39701077SMC proteins Flexible Hinge Domain containing protein, expressed
LOC_Os01g67750Os.49959.1.S1_at11/111+39701785..39706394expressed protein
LOC_Os01g67760OsAffx.6537.1.S1_at1/111+39708477..39709213hypothetical protein
LOC_Os01g67770Os.49428.1.S1_at11/111+39714083..39716843myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9904.1.S1_x_at--941--6851Chr01:39685156..39685180 (25 bp)
GTTTGATACTAGATTACCACCAGGA
LOC_Os01g67720
Os.9904.1.S1_x_at--539--971Chr01:39685135..39685159 (25 bp)
AGGAGTAACTGCTATGTCACCCTTC
LOC_Os01g67720
Os.9904.1.S1_x_at--183--1251Chr01:39684884..39685111 (25 bp)
AGTTGGAGTGCAGAGCTTCCCTGAA
LOC_Os01g67720
Os.9904.1.S1_x_at--872--2771Chr01:39684861..39684885 (25 bp)
AAGAGCTATTTTCAGTGCTTCGAAC
LOC_Os01g67720
Os.9904.1.S1_x_at--376--7331Chr01:39684847..39684871 (25 bp)
GTGCTTCGAACTATACAACTTTTAC
LOC_Os01g67720
Os.9904.1.S1_x_at--495--10751Chr01:39684817..39684841 (25 bp)
TTGACTGTTGGGATGGGCCTCAGAT
LOC_Os01g67720
Os.9904.1.S1_x_at--631--3751Chr01:39684799..39684823 (25 bp)
CTCAGATTCTCATGTGCTCAGCAAT
LOC_Os01g67720
Os.9904.1.S1_x_at--245--1691Chr01:39684771..39684795 (25 bp)
AGCCTATTGCCGAGGAAGCTTTGTT
LOC_Os01g67720
Os.9904.1.S1_x_at--485--1411Chr01:39684587..39684611 (25 bp)
AGAAGGCCGCGGAGAAGTTTTGTCA
LOC_Os01g67720
Os.9904.1.S1_x_at--952--9851Chr01:39684422..39684446 (25 bp)
TACACATATTTCCTTTGTGCCATAT
LOC_Os01g67720
Os.9904.1.S1_x_at--1073--7271Chr01:39684406..39684430 (25 bp)
GTGCCATATGGTTTTGACACGATAA
LOC_Os01g67720
Target Sequence 
GTTTGATACTAGATTACCACCAGGAGTAACTGCTATGTCACCCTTCGCCGAGGATTCTTCNCTAAATAAAGTTGGAGTGC
AGAGCTTCCCTGAAGAGCTATTTTCAGTGCTTCGAACTATACAACTTTTACGTGGGTTGACTGTTGGGATGGGCCTCAGA
TTCTCATGTGCTCAGCAATGGAAGCCTATTGCCGAGGAAGCTTTGTTGAAGTCTGGGAGACTAAAAGCTGCAAGATCAAG
AAGGCCGCGGAGAAGTTTTGTCAGGAGACTGTTTTCGAGTGACAACGAGAACCAAGGAACATGATATTNCAATTGTTTCA
TNTAACAAATATCATGTATTTTGAAGTGACATTAATAACAGGCTCAAGCCCAATTTTTTATGATGCATATATGCATATAA
GACTACACATATTTCCTTTGTGCCATATGGTTTTGACACGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9904.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis