Browse Element(s) Details


Os.49959.1.S1_at

Description gb:AK119437.1
DB_XREF= gi:37989060
TID=Os.49959.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49959 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-133-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-133-B03, full insert sequence.
FL= gb:AK119437.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6775011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67710OsAffx.21785.2.S1_at9/111+39676432..39678264hypothetical protein
LOC_Os01g67710OsAffx.21785.1.S1_at1/111+39676432..39678264hypothetical protein
LOC_Os01g67710Os.53962.1.S1_at1/111+39676432..39678264hypothetical protein
LOC_Os01g67720Os.37837.1.A1_at11/111+39684313..39689720ABC1 family protein, expressed
LOC_Os01g67720Os.9904.2.S1_x_at11/111+39684313..39689720ABC1 family protein, expressed
LOC_Os01g67720Os.9904.1.S1_x_at11/111+39684313..39689720ABC1 family protein, expressed
LOC_Os01g67730Os.16682.2.S1_x_at9/111+39690092..396923101-imidazole-4-carboxamide isomerase, putative, expressed
LOC_Os01g67730Os.16682.1.S1_at8/111+39690092..396923101-imidazole-4-carboxamide isomerase, putative, expressed
LOC_Os01g67740Os.48518.1.S1_at11/111+39692769..39701077SMC proteins Flexible Hinge Domain containing protein, expressed
LOC_Os01g67750Os.49959.1.S1_at11/111+39701785..39706394expressed protein
LOC_Os01g67760OsAffx.6537.1.S1_at1/111+39708477..39709213hypothetical protein
LOC_Os01g67770Os.49428.1.S1_at11/111+39714083..39716843myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g67780NANA1+39725304..39726995NA
LOC_Os01g67790OsAffx.18055.1.S1_at2/111+39728030..39728512hypothetical protein
LOC_Os01g67800NANA1+39730000..39734334retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49959.1.S1_at--702--2471Chr01:39702338..39702362 (25 bp)
AACACGGAGCAGTCATTCATACATA
LOC_Os01g67750
Os.49959.1.S1_at--1127--2651Chr01:39702275..39702299 (25 bp)
AAGCCTATCGAAAGAGTTGCAGCCA
LOC_Os01g67750
Os.49959.1.S1_at--526--6671Chr01:39702260..39702284 (25 bp)
GTTGCAGCCACTATATCATCTGTAC
LOC_Os01g67750
Os.49959.1.S1_at--315--7951Chr01:39702205..39702229 (25 bp)
GGATCTGGATAATTGCTGTCTGGGC
LOC_Os01g67750
Os.49959.1.S1_at--79--9751Chr01:39702196..39702220 (25 bp)
TAATTGCTGTCTGGGCAGCATCAGT
LOC_Os01g67750
Os.49959.1.S1_at--148--3471Chr01:39702169..39702193 (25 bp)
CAGTGTTCTTATTGGTGATCTCCAT
LOC_Os01g67750
Os.49959.1.S1_at--423--471Chr01:39702152..39702176 (25 bp)
ATCTCCATGTTTTTCACTGATCGAA
LOC_Os01g67750
Os.49959.1.S1_at--657--5291Chr01:39702090..39702114 (25 bp)
GAAGGCCCACGTCTGACTACAAAAT
LOC_Os01g67750
Os.49959.1.S1_at--312--9151Chr01:39702056..39702080 (25 bp)
TGCGATCATGAAATGTATTCCTCTG
LOC_Os01g67750
Os.49959.1.S1_at--275--10831Chr01:39702004..39702028 (25 bp)
TTGGGAGCTCTAGAGGCTGACAACA
LOC_Os01g67750
Os.49959.1.S1_at--714--6211Chr01:39701992..39702016 (25 bp)
GAGGCTGACAACACATCTGTAATTG
LOC_Os01g67750
Target Sequence 
AACACGGAGCAGTCATTCATACATAACATTAAGCAAAAATCCCACATTGATGTGGCTAAGCTGAAGCCTATCGAAAGAGT
TGCAGCCACTATATCATCTGTACATAGAGCAAGGAGGCTAGCTAGATCTTCAAGGATCTGGATAATTGCTGTCTGGGCAG
CATCAGTTNCAGTGTTCTTATTGGTGATCTCCATGTTTTTCACTGATCGAAGGAGAAGTGTTTCGAGATCGAGGATTTNC
AGAAGCCAGAAGGCCCACGTCTGACTACAAAATAAACAACATTGCGATCATGAAATGTATTCCTCTGNCAATACAGTACA
TAAAGGGGTAGAGNTTGGGAGCTCTAGAGGCTGACAACACATCTGTAATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49959.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis