Browse Element(s) Details


Os.7758.1.S1_at

Description gb:AK068692.1
DB_XREF= gi:32978709
TID=Os.7758.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.7758 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013159P19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013159P19, full insert sequence.
FL= gb:AK068692.1 gb:AK060556.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1048011/11zinc finger and C2 domain protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10430Os.27268.1.A1_at11/112+5478744..54808811-imidazole-4-carboxamide isomerase, putative, expressed
LOC_Os02g10430Os.16682.2.S1_x_at1/112+5478744..54808811-imidazole-4-carboxamide isomerase, putative, expressed
LOC_Os02g10440Os.49257.1.S1_x_at11/112+5483081..5489299expressed protein
LOC_Os02g10440Os.49257.2.S1_at11/112+5483081..5489299expressed protein
LOC_Os02g10450Os.15386.1.S1_at11/112+5490496..5491873expressed protein
LOC_Os02g10460OsAffx.11974.1.S1_at11/112+5492446..5493614hypothetical protein
LOC_Os02g10470Os.19187.1.S1_at11/112+5501165..5504378calcium-binding EF hand family protein, putative, expressed
LOC_Os02g10480Os.7758.1.S1_at11/112+5505087..5508425zinc finger and C2 domain protein, putative, expressed
LOC_Os02g10480OsAffx.21601.1.S1_at1/112+5505087..5508425zinc finger and C2 domain protein, putative, expressed
LOC_Os02g10490OsAffx.24187.1.S1_at11/112+5511434..5517919expressed protein
LOC_Os02g10500Os.51300.1.S1_x_at4/112+5519608..5519865hypothetical protein
LOC_Os02g10510Os.9235.1.S1_at11/112+5523998..5528722Ubiquitin family protein, expressed
LOC_Os02g10520Os.50238.1.S1_x_at11/112+5529956..5536941subtilisin-like protease, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0005794cellular_componentGolgi apparatus
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005543molecular_functionphospholipid binding
GO:0008060molecular_functionARF GTPase activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7758.1.S1_at--125--8851Chr02:5507559..5507583 (25 bp)
TGATCAAAGCCAACCTGAACCCTGT
LOC_Os02g10480
Os.7758.1.S1_at--882--8171Chr02:5507586..5507610 (25 bp)
GGAACGAAGAACTCAAGCTCTCTGT
LOC_Os02g10480
Os.7758.1.S1_at--181--4551Chr02:5507625..5507915 (25 bp)
GCCCTCTCAAACTGCAAGTGTTCGA
LOC_Os02g10480
Os.7758.1.S1_at--489--2871Chr02:5507906..5507930 (25 bp)
AAGTGTTCGACCACGACATGCTGTC
LOC_Os02g10480
Os.7758.1.S1_at--454--5671Chr02:5507920..5507944 (25 bp)
GACATGCTGTCCAAGGACGACCTGA
LOC_Os02g10480
Os.7758.1.S1_at--1031--9711Chr02:5508119..5508143 (25 bp)
TCAAGCTGCAGTTCACCGAGTCCGG
LOC_Os02g10480
Os.7758.1.S1_at--596--1091Chr02:5508164..5508188 (25 bp)
AGTGGTTTCCACTCAACATGTAGAA
LOC_Os02g10480
Os.7758.1.S1_at--406--5511Chr02:5508186..5508210 (25 bp)
GAACAAATCACGCTGTCACTTCGGA
LOC_Os02g10480
Os.7758.1.S1_at--660--8231Chr02:5508306..5508330 (25 bp)
GGCAAATTTTGCTGCGTTCAGAAAT
LOC_Os02g10480
Os.7758.1.S1_at--685--2231Chr02:5508334..5508358 (25 bp)
AAATTTTTGGTTTGGCACGAGCCAT
LOC_Os02g10480
Os.7758.1.S1_at--490--3591Chr02:5508356..5508380 (25 bp)
CATTGCCCTGTTAACTTGGTTCATT
LOC_Os02g10480
Target Sequence 
TGATCAAAGCCAACCTGAACCCTGTCTGGAACGAAGAACTCAAGCTCTCTGTTCCTCAGCAATACGGCCCTCTCAAACTG
CAAGTGTTCGACCACGACATGCTGTCCAAGGACGACCTGATGGGGGAGGCCGAGATCGACCTGCAGCCGATGATCAACGC
GGCGGCGGCGTTCGGCGACCCGGGGCTGCTCGGCGACCGGCAGATCGGCCGGTGGCTCAAGTCCGGCGACAACGCGCTCG
TCAGGGACAGCGCCGTCGTGGTCGCCGGCGGCGAGGTGAGGCAGGAGCTGGCCCTCAAGCTGCAGTTCACCGAGTCCGGC
GAGGTGGAGCTGGAGATGCAGTGGTTTCCACTCAACATGTAGAACAAATCACGCTGTCACTTCGGATTTCAAGCTGGAGA
ATTTTAGAAAAAGAAAAGATGGGTTTTGATAATGAAGTTCATTGCATGAACTGTTTCAGCAAGTTTTTGCGTTGTTTACA
TGGCAAATTTTGCTGCGTTCAGAAATTTTAAATTTTTGGTTTGGCACGAGCCATTGCCCTGTTAACTTGGTTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7758.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis