Browse Element(s) Details


Os.52183.1.S1_at

Description gb:AK065498.1
DB_XREF= gi:32975516
TID=Os.52183.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52183 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013025C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013025C03, full insert sequence.
FL= gb:AK065498.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1040011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10350Os.7662.1.S1_at11/112+5442111..5447378Mlo family protein, expressed
LOC_Os02g10360OsAffx.11973.1.S1_at11/112+5451819..5453090GRAS family transcription factor containing protein
LOC_Os02g10370Os.12121.1.S1_at11/112+5463806..5464415expressed protein
LOC_Os02g10380OsAffx.2564.1.S1_x_at2/112+5465521..5468116regulator of chromosome condensation, putative, expressed
LOC_Os02g10390Os.28403.1.S1_a_at11/112+5468374..5470496Chlorophyll a-b binding protein 8, chloroplast precursor, putative, expressed
LOC_Os02g10400Os.52183.1.S1_at11/112+5470944..5475134expressed protein
LOC_Os02g10410OsAffx.2565.1.S1_at11/112+5475698..5475958hypothetical protein
LOC_Os02g10420NANA2+5477110..5478166hypothetical protein
LOC_Os02g10430Os.27268.1.A1_at11/112+5478744..54808811-imidazole-4-carboxamide isomerase, putative, expressed
LOC_Os02g10430Os.16682.2.S1_x_at1/112+5478744..54808811-imidazole-4-carboxamide isomerase, putative, expressed
LOC_Os02g10440Os.49257.1.S1_x_at11/112+5483081..5489299expressed protein
LOC_Os02g10440Os.49257.2.S1_at11/112+5483081..5489299expressed protein
LOC_Os02g10450Os.15386.1.S1_at11/112+5490496..5491873expressed protein
LOC_Os02g10460OsAffx.11974.1.S1_at11/112+5492446..5493614hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52183.1.S1_at--832--431Chr02:5472286..5472310 (25 bp)
ATCTTCTCCTTGTGTATGGTCCTGG
LOC_Os02g10400
Os.52183.1.S1_at--884--9251Chr02:5472243..5472267 (25 bp)
TCCTGCATGGAGATTACGGTACACA
LOC_Os02g10400
Os.52183.1.S1_at--440--3431Chr02:5472021..5472244 (25 bp)
CAGAGATTATGTACGTGGGTCCACT
LOC_Os02g10400
Os.52183.1.S1_at--839--5551Chr02:5471969..5471993 (25 bp)
GAAAGCTTTATATCGGTTCTCACGT
LOC_Os02g10400
Os.52183.1.S1_at--773--7631Chr02:5471220..5471244 (25 bp)
GGGACGCTTCTGGAACTGACCAAAT
LOC_Os02g10400
Os.52183.1.S1_at--129--2851Chr02:5471188..5471212 (25 bp)
AAGTCTTGGCAGCTATCGGCATTGT
LOC_Os02g10400
Os.52183.1.S1_at--532--4913Chr05:29654800..29654902 (24 bp)
GCTTCCTTCCTTTCTGATAGAGAAT
NONE
Os.52183.1.S1_at--15--2631Chr02:5471050..5471074 (25 bp)
AACCGAACACGTGTACCGAGATTGT
LOC_Os02g10400
Os.52183.1.S1_at--779--6051Chr02:5471033..5471057 (25 bp)
GAGATTGTCTTGTTTTTCACCCTGT
LOC_Os02g10400
Os.52183.1.S1_at--273--10531Chr02:5471018..5471042 (25 bp)
TTCACCCTGTGAAATTCGCTCTCAT
LOC_Os02g10400
Os.52183.1.S1_at--42--9531Chr02:5470999..5471023 (25 bp)
TCTCATCTCTCACTGTTGTACTTGA
LOC_Os02g10400
Target Sequence 
ATCTTCTCCTTGTGTATGGTCCTGGTAGATTTCATTTGGGATTTCCTGCATGGAGATTACGGTACACAGAGATTATGTAC
GTGGGTCCACTGGAATCAATGAAATATGGTACCATTGTGAAAGCTTTATATCGGTTCTCACGTAAATATCAAAATTATGG
TAAATGATACTGAGTCTGAGAGCGAGGTAGTACTTGTTTACAGAAGACCCATTTTTATGTGAAGGGGACGCTTCTGGAAC
TGACCAAATTTCACGCAAGTCTTGGCAGCTATCGGCATTGTGCTTCCTTCCTTTCTGATAGAGAATCGAAATGGGCTACT
CGTAGAATGAATGTTAGTTTGTTTTCGTCAGAATGTAAAACTACATATGTGCAGTTCAGTGGTAAAAACTCTCAAACCGA
ACACGTGTACCGAGATTGTCTTGTTTTTCACCCTGTGAAATTCGCTCTCATCTCTCACTGTTGTACTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52183.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis