Browse Element(s) Details


OsAffx.11973.1.S1_at

Description tigr:9630.m00955
TID=OsAffx.11973.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AJ303345 lateral suppressor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1036011/11GRAS family transcription factor containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10330NANA2+5428867..5431872hypothetical protein
LOC_Os02g10340OsAffx.20387.1.S1_x_at1/112+5432508..5438758retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g10350Os.7662.1.S1_at11/112+5442111..5447378Mlo family protein, expressed
LOC_Os02g10360OsAffx.11973.1.S1_at11/112+5451819..5453090GRAS family transcription factor containing protein
LOC_Os02g10370Os.12121.1.S1_at11/112+5463806..5464415expressed protein
LOC_Os02g10380OsAffx.2564.1.S1_x_at2/112+5465521..5468116regulator of chromosome condensation, putative, expressed
LOC_Os02g10390Os.28403.1.S1_a_at11/112+5468374..5470496Chlorophyll a-b binding protein 8, chloroplast precursor, putative, expressed
LOC_Os02g10400Os.52183.1.S1_at11/112+5470944..5475134expressed protein
LOC_Os02g10410OsAffx.2565.1.S1_at11/112+5475698..5475958hypothetical protein
LOC_Os02g10420NANA2+5477110..5478166hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008356biological_processasymmetric cell division
GO:0009630biological_processgravitropism
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009938biological_processnegative regulation of gibberellic acid mediated signaling
GO:0010187biological_processnegative regulation of seed germination
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11973.1.S1_at--929--4511Chr02:5452370..5452394 (25 bp)
GCCCTGGAGTTGCACCCGGACGAGA
LOC_Os02g10360
OsAffx.11973.1.S1_at--1042--8091Chr02:5452353..5452377 (25 bp)
GGACGAGACGCTGGCCGTCAACTGC
LOC_Os02g10360
OsAffx.11973.1.S1_at--432--7091Chr02:5452337..5452361 (25 bp)
GTCAACTGCGTGCTGTTCCTTCACA
LOC_Os02g10360
OsAffx.11973.1.S1_at--197--2551Chr02:5452334..5452358 (25 bp)
AACTGCGTGCTGTTCCTTCACAAGC
LOC_Os02g10360
OsAffx.11973.1.S1_at--61--7311Chr02:5452328..5452352 (25 bp)
GTGCTGTTCCTTCACAAGCTCGGCG
LOC_Os02g10360
OsAffx.11973.1.S1_at--719--4511Chr02:5452289..5452313 (25 bp)
GCCGCCTTCCTCAGGTGGGTCAAGT
LOC_Os02g10360
OsAffx.11973.1.S1_at--687--4331Chr02:5452243..5452267 (25 bp)
CCATCGCCGAGAGAGAAGGAGTCCT
LOC_Os02g10360
OsAffx.11973.1.S1_at--308--4631Chr02:5452160..5452184 (25 bp)
GCGATGGACTACTACTCGTCGGTGT
LOC_Os02g10360
OsAffx.11973.1.S1_at--46--6251Chr02:5452158..5452182 (25 bp)
GATGGACTACTACTCGTCGGTGTTC
LOC_Os02g10360
OsAffx.11973.1.S1_at--189--7951Chr02:5452155..5452179 (25 bp)
GGACTACTACTCGTCGGTGTTCGAC
LOC_Os02g10360
OsAffx.11973.1.S1_at--202--571Chr02:5452073..5452097 (25 bp)
ATCCTCAGCCGGGAGATCGACGCGG
LOC_Os02g10360
Target Sequence 
GCCCTGGAGTTGCACCCGGACGAGACGCTGGCCGTCAACTGCGTGCTGTTCCTTCACAAGCTCGGCGGCGACGGTGAGCT
CGCCGCCTTCCTCAGGTGGGTCAAGTCCATGAACCCCGCCGTGGTGACCATCGCCGAGAGAGAAGGAGTCCTCGGAGGTG
ACGTCGACGACGACAACGTCCCGGACGAGCTGCCGCGGCGGGTGGCGGCGGCGATGGACTACTACTCGTCGGTGTTCGAC
GCGCTGGAGGCCACGGTGCCGCCGGCGAGCGCGGACCGGCTGGCGGTGGAGCAGGAGATCCTCAGCCGGGAGATCGACGC
GG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11973.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis