Browse Element(s) Details


Os.28403.1.S1_a_at

Description gb:AK106085.1
DB_XREF= gi:32991294
TID=Os.28403.1
CNT=598
FEA=FLmRNA
TIER=FL+Stack
STK=26
UG=Os.28403 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-301-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-207-B02, full insert sequence.
FL= gb:AK104458.1 gb:AK104385.1 gb:AK104522.1 gb:AK104446.1 gb:AK109398.2 gb:AK104348.1 gb:AK119554.1 gb:AK104557.1 gb:AK104469.1 gb:AK104535.1 gb:AK104096.1 gb:AK106085.1 gb:AK060143.1 gb:AK104392.1 gb:AK104215.1 gb:AK060970.1 gb:AK104734.1 gb:AK104646.1 gb:AK104636.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1039011/11Chlorophyll a-b binding protein 8, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10350Os.7662.1.S1_at11/112+5442111..5447378Mlo family protein, expressed
LOC_Os02g10360OsAffx.11973.1.S1_at11/112+5451819..5453090GRAS family transcription factor containing protein
LOC_Os02g10370Os.12121.1.S1_at11/112+5463806..5464415expressed protein
LOC_Os02g10380OsAffx.2564.1.S1_x_at2/112+5465521..5468116regulator of chromosome condensation, putative, expressed
LOC_Os02g10390Os.28403.1.S1_a_at11/112+5468374..5470496Chlorophyll a-b binding protein 8, chloroplast precursor, putative, expressed
LOC_Os02g10400Os.52183.1.S1_at11/112+5470944..5475134expressed protein
LOC_Os02g10410OsAffx.2565.1.S1_at11/112+5475698..5475958hypothetical protein
LOC_Os02g10420NANA2+5477110..5478166hypothetical protein
LOC_Os02g10430Os.27268.1.A1_at11/112+5478744..54808811-imidazole-4-carboxamide isomerase, putative, expressed
LOC_Os02g10430Os.16682.2.S1_x_at1/112+5478744..54808811-imidazole-4-carboxamide isomerase, putative, expressed
LOC_Os02g10440Os.49257.1.S1_x_at11/112+5483081..5489299expressed protein
LOC_Os02g10440Os.49257.2.S1_at11/112+5483081..5489299expressed protein
LOC_Os02g10450Os.15386.1.S1_at11/112+5490496..5491873expressed protein
LOC_Os02g10460OsAffx.11974.1.S1_at11/112+5492446..5493614hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009768biological_processphotosynthesis, light harvesting in photosystem I
GO:0009769biological_processphotosynthesis, light harvesting in photosystem II
GO:0015979biological_processphotosynthesis
GO:0009782cellular_componentphotosystem I antenna complex
GO:0030076cellular_componentlight-harvesting complex
GO:0042651cellular_componentthylakoid membrane
GO:0016168molecular_functionchlorophyll binding
GO:0031409molecular_functionpigment binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28403.1.S1_a_at--5--8431Chr02:5469141..5469165 (25 bp)
GGCCTCGAGAAGTACCTCGCCGGCT
LOC_Os02g10390
Os.28403.1.S1_a_at--819--7911Chr02:5468956..5468980 (25 bp)
GGTTGGCCCCGTGCAGAACCTGCTT
LOC_Os02g10390
Os.28403.1.S1_a_at--985--1431Chr02:5468942..5468966 (25 bp)
AGAACCTGCTTGATCACCTCGCTGA
LOC_Os02g10390
Os.28403.1.S1_a_at--801--9671Chr02:5468897..5468921 (25 bp)
TCACCAGCCTCAAGTTCCATTAGAG
LOC_Os02g10390
Os.28403.1.S1_a_at--721--2811Chr02:5468886..5468910 (25 bp)
AAGTTCCATTAGAGATGCCATCAAC
LOC_Os02g10390
Os.28403.1.S1_a_at--523--751Chr02:5468826..5468850 (25 bp)
ATGTATGTACGTGCGTATGCGTATA
LOC_Os02g10390
Os.28403.1.S1_a_at--967--6911Chr02:5468788..5468812 (25 bp)
GTATGTACGCAACTTTGTACGATCG
LOC_Os02g10390
Os.28403.1.S1_a_at--528--3251Chr02:5468779..5468803 (25 bp)
CAACTTTGTACGATCGATGGTGCGT
LOC_Os02g10390
Os.28403.1.S1_a_at--692--2251Chr02:5468674..5468698 (25 bp)
AAATTTGTGCTCCAACTGATTTGCA
LOC_Os02g10390
Os.28403.1.S1_a_at--724--2551Chr02:5468661..5468685 (25 bp)
AACTGATTTGCACGCATGGTCGCAT
LOC_Os02g10390
Os.28403.1.S1_a_at--477--211Chr02:5468656..5468680 (25 bp)
ATTTGCACGCATGGTCGCATGGATC
LOC_Os02g10390
Target Sequence 
GGCCTCGAGAAGTACCTCGCCGGCTCCGGCGAGCCGGCCTACCCCGGCGGCCCGCTCTTCAACCCNNCNNNNNNCNNTNN
GGGACCAAGAGCGAGGCGGAGATGAAGGAGCTCAAGCTCAAGGAGATCAAGAATGGCAGGCTCGCCATGCTCGCCTTCCT
CGGCTTCTCCGTCCAGGCGCTCTTCACCGGGGTTGGCCCCGTGCAGAACCTGCTTGATCACCTCGCTGATCCCGTCCACA
ACAACATCCTCACCAGCCTCAAGTTCCATTAGAGATGCCATCAACTACGTATTTAATTAATTACGAGTTTTTAATTATGT
ATGTATGTACGTGCGTATGCGTATATGTGTGTACGTATGTATGTACGCAACTTTGTACGATCGATGGTGCGTGTGATCGA
GAGGGGTATGTATGTACGTACGTATATACGATGTATTATTATGCATGGGTGTAGGGTGTGGGTGTAACATGTAAATTTGT
GCTCCAACTGATTTGCACGCATGGTCGCATGGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28403.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis