Browse Element(s) Details


Os.54540.1.S1_at

Description gb:AK105560.1
DB_XREF= gi:32990769
TID=Os.54540.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54540 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-128-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-128-B08, full insert sequence.
FL= gb:AK105560.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1053010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10510Os.9235.1.S1_at11/112+5523998..5528722Ubiquitin family protein, expressed
LOC_Os02g10520Os.50238.1.S1_x_at11/112+5529956..5536941subtilisin-like protease, putative, expressed
LOC_Os02g10530Os.54540.1.S1_at10/112+5548055..5549534expressed protein
LOC_Os02g10540Os.25094.1.A1_at11/112+5550089..5552103Ribosomal protein L7/L12 C-terminal domain containing protein, expressed
LOC_Os02g10550OsAffx.11976.2.S1_s_at11/112+5554686..5556179NB-ARC domain containing protein, expressed
LOC_Os02g10560OsAffx.2566.1.S1_at10/112+5560274..5561053hypothetical protein
LOC_Os02g10560OsAffx.2566.1.S1_x_at10/112+5560274..5561053hypothetical protein
LOC_Os02g10560OsAffx.3289.2.A1_at1/112+5560274..5561053hypothetical protein
LOC_Os02g10570OsAffx.2567.1.S1_at11/112+5561298..5563775hypothetical protein
LOC_Os02g10570OsAffx.16205.1.S1_at1/112+5561298..5563775hypothetical protein
LOC_Os02g10580OsAffx.11976.1.S1_at11/112+5566073..5567620NB-ARC domain containing protein, expressed
LOC_Os02g10580OsAffx.11976.2.S1_s_at11/112+5566073..5567620NB-ARC domain containing protein, expressed
LOC_Os02g10590Os.52104.1.S1_at11/112+5567953..5569801peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os02g10590OsAffx.29478.1.S1_x_at2/112+5567953..5569801peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os02g10590OsAffx.29478.1.S1_at1/112+5567953..5569801peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os02g10600OsAffx.11977.1.S1_at11/112+5573182..5578000F-box protein interaction domain containing protein, expressed
LOC_Os02g10600Os.28395.1.S1_x_at11/112+5573182..5578000F-box protein interaction domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54540.1.S1_at--1160--2911Chr02:5548981..5549005 (25 bp)
AAGGACGCGTTCAAGCGGACCAGGT
LOC_Os02g10530
Os.54540.1.S1_at--140--4531Chr02:5549092..5549116 (25 bp)
GCCGCCGGCAGAAAGGACCACGAGA
LOC_Os02g10530
Os.54540.1.S1_at--772--1871Chr02:5549111..5549135 (25 bp)
ACGAGATCGTCGTGGACAGCGCCAT
LOC_Os02g10530
Os.54540.1.S1_at--874--4011Chr02:5549193..5549217 (25 bp)
CGTCAGGAGCCTGCAGTGGAAGTTC
LOC_Os02g10530
Os.54540.1.S1_at--859--2591Chr02:5549224..5549248 (25 bp)
AACGAGACGGTGATCGTCGACCAGT
LOC_Os02g10530
Os.54540.1.S1_at--1134--1691Chr02:5549243..5549267 (25 bp)
ACCAGTCGCCGGTGCAGGTGCTCTG
LOC_Os02g10530
Os.54540.1.S1_at--1101--9091Chr02:5549261..5549285 (25 bp)
TGCTCTGGGACGTCCACGACTGGAT
LOC_Os02g10530
Os.54540.1.S1_at--601--9451Chr02:5549393..5549417 (25 bp)
TCGGCGACGAAGGTGGCTACAGCTT
LOC_Os02g10530
Os.54540.1.S1_at--820--1551Chr02:5549413..5549437 (25 bp)
AGCTTCTTCCTCCAGGCGTGGAAGA
LOC_Os02g10530
Os.54540.1.S1_at--145--9631Chr02:5549448..5549472 (25 bp)
TCATGGGCATGAGACAGGGTTTAAT
LOC_Os02g10530
Os.54540.1.S1_at--1046--6271NONE
GATGTTTGGACCGATTTGTTTACAT
NONE
Target Sequence 
AAGGACGCGTTCAAGCGGACCAGGTCCCGCCCGTCGCTCGACGACGCCGTGCTCGTGTCGCGCCGCGAGAGCGTCTCCGG
CAGGCGCACCTTCGCCGCCCGCGCGCCGCTCGCCGCCGGCAGAAAGGACCACGAGATCGTCGTGGACAGCGCCATCGCCG
GGCCGAGGGAGCCGGAGATGCGGATCACGGTGGACGGCGTCGTGCTGGTGCACGTCAGGAGCCTGCAGTGGAAGTTCAGG
GGCAACGAGACGGTGATCGTCGACCAGTCGCCGGTGCAGGTGCTCTGGGACGTCCACGACTGGATCTTCGCCGGCGGCCC
GGCGGCGCAGGCCGTCTTCGTCTTCAAGCCCGGCGCGCCGCCGCCGGGCGGGGACAGGTGCGGCCGCCGCGGCGGCGCCG
GCGCCGGCGGCATCGGCGACGAAGGTGGCTACAGCTTCTTCCTCCAGGCGTGGAAGACGGAGTGAGGTCATGGGCATGAG
ACAGGGTTTAATTTGCAGGATGTTTGGACCGATTTGTTTACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54540.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis