Browse Element(s) Details


OsAffx.3289.2.A1_at

Description tigr:9632.m03442
TID=OsAffx.3289.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3572010/11hypothetical protein
LOC_Os02g105601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35680Os.50533.1.S1_at11/114+21558280..21560175U-box domain containing protein, expressed
LOC_Os04g35690Os.57071.1.S1_at11/114+21563535..21564977TPR Domain containing protein, expressed
LOC_Os04g35700Os.27038.1.S1_at11/114+21565180..21571197mitogen-activated kinase kinase kinase alpha, putative, expressed
LOC_Os04g35710NANA4+21575558..21576310hypothetical protein
LOC_Os04g35720OsAffx.3289.2.A1_at10/114+21580128..21581511hypothetical protein
LOC_Os04g35730NANA4+21582589..21583281transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g35739NANA4+21598187..21598789retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g35750OsAffx.14165.1.S1_at11/114+21604132..21604837expressed protein
LOC_Os04g35750OsAffx.14165.1.S1_x_at11/114+21604132..21604837expressed protein
LOC_Os04g35760Os.52307.1.S1_at11/114+21605505..21607861expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3289.2.A1_at--1044--61518Chr12:12231258..12231278 (21 bp)
GAGGAGATATTTTTAGTCCTGGTTT
NONE
OsAffx.3289.2.A1_at--618--9491Chr04:21581108..21581132 (25 bp)
TCTCCACCAGTGAAGATAACAATGC
LOC_Os04g35720
OsAffx.3289.2.A1_at--399--6471Chr04:21581094..21581118 (25 bp)
GATAACAATGCCTACCTAATACCGA
LOC_Os04g35720
OsAffx.3289.2.A1_at--764--3171Chr04:21581089..21581113 (25 bp)
CAATGCCTACCTAATACCGAGGTTT
LOC_Os04g35720
OsAffx.3289.2.A1_at--802--10331NONE
TTATCGGCGGTAAGGAACATCTGGG
NONE
OsAffx.3289.2.A1_at--1126--7271Chr04:21580291..21580315 (25 bp)
GTGGTAGGCGTCACCTCGAACGGCT
LOC_Os04g35720
OsAffx.3289.2.A1_at--95--5472Chr04:21580242..21580266 (25 bp)
GAACTGGCTGAAGCCCAGCTGCCGG
LOC_Os04g35720
OsAffx.3289.2.A1_at--1126--3811Chr04:21580224..21580248 (25 bp)
CTGCCGGCCGGAGATGACCAGCTTG
LOC_Os04g35720
OsAffx.3289.2.A1_at--480--1292Chr04:21580213..21580237 (25 bp)
AGATGACCAGCTTGGGCGGCGCGAA
LOC_Os04g35720
OsAffx.3289.2.A1_at--394--5291Chr04:21580191..21580215 (25 bp)
GAATGGCCCGAACTCGACGGCAGCT
LOC_Os04g35720
OsAffx.3289.2.A1_at--336--2551Chr04:21580181..21580205 (25 bp)
AACTCGACGGCAGCTGGCCTGCTGG
LOC_Os04g35720
Target Sequence 
GAGGAGATATTTTTAGTCCTGGTTTTTAATACAACCGGGACTATTGTAAAATCTGGTCGACCGACCAAAGATGGTTTCTC
CACCAGTGAAGATAACAATGCCTACCTAATACCGAGGTTTCCCAAATCGCCGGGGCGCGGTAGGGTTACCGCGCCCCGGC
GGAGGTTACCGCGGTATTTATATTACCGTACCCCCGCGGTAAGCCCGGTAACCGCGCGGTTATCGGCGGTAAGGAACATC
TGGGGTGGTAGGCGTCACCTCGAACGGCTGGGAGAGTGGGAGGACGAGCCGGCGAACTGGCTGAAGCCCAGCTGCCGGCC
GGAGATGACCAGCTTGGGCGGCGCGAATGGCCCGAACTCGACGGCAGCTGGCCTGCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3289.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis