Browse Element(s) Details


Os.52307.1.S1_at

Description gb:AK066277.1
DB_XREF= gi:32976295
TID=Os.52307.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52307 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013060K17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013060K17, full insert sequence.
FL= gb:AK066277.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3576011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35720OsAffx.3289.2.A1_at10/114+21580128..21581511hypothetical protein
LOC_Os04g35730NANA4+21582589..21583281transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g35739NANA4+21598187..21598789retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g35750OsAffx.14165.1.S1_at11/114+21604132..21604837expressed protein
LOC_Os04g35750OsAffx.14165.1.S1_x_at11/114+21604132..21604837expressed protein
LOC_Os04g35760Os.52307.1.S1_at11/114+21605505..21607861expressed protein
LOC_Os04g35770Os.52558.1.S1_at11/114+21608081..21609864Pectinesterase family protein, expressed
LOC_Os04g35770OsAffx.26346.1.S1_s_at11/114+21608081..21609864Pectinesterase family protein, expressed
LOC_Os04g35780Os.6341.1.S1_at11/114+21611821..21614243cytoplasm protein, putative, expressed
LOC_Os04g35790Os.52185.1.A1_at11/114+21624777..21628755expressed protein
LOC_Os04g35800Os.51094.1.A1_at10/114+21630798..21636341Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52307.1.S1_at--604--4111Chr04:21606212..21606236 (25 bp)
CGAAGCGTTCACAATTGCATACCGT
LOC_Os04g35760
Os.52307.1.S1_at--672--6091Chr04:21606169..21606193 (25 bp)
GAGTCAGCAGGCAGGATACCACAAA
LOC_Os04g35760
Os.52307.1.S1_at--602--6131Chr04:21605955..21605979 (25 bp)
GAGGGTTATCCGCATCCCTGATGAT
LOC_Os04g35760
Os.52307.1.S1_at--289--5431Chr04:21605927..21605951 (25 bp)
GAACGCTTCAAAGAACGGGCCATGT
LOC_Os04g35760
Os.52307.1.S1_at--1060--7551Chr04:21605911..21605935 (25 bp)
GGGCCATGTATGTCAGGTACACCAT
LOC_Os04g35760
Os.52307.1.S1_at--343--2951Chr04:21605851..21605875 (25 bp)
AAGGCGATGGAGTTTTCAGGCTCAT
LOC_Os04g35760
Os.52307.1.S1_at--90--5671Chr04:21605819..21605843 (25 bp)
GACATGGACCTGTGCGAGTGCACCT
LOC_Os04g35760
Os.52307.1.S1_at--140--1071Chr04:21605681..21605705 (25 bp)
AGGGTGCATTCTGACTGCTGACTGA
LOC_Os04g35760
Os.52307.1.S1_at--473--5731Chr04:21605662..21605686 (25 bp)
GACTGATCAGATGCCTCTTTTGAGT
LOC_Os04g35760
Os.52307.1.S1_at--870--2431Chr04:21605597..21605621 (25 bp)
AAAAGGTGCTCTGCCATTGTGTGTG
LOC_Os04g35760
Os.52307.1.S1_at--986--1131Chr04:21605535..21605559 (25 bp)
AGTGCCAACACCCAACAGTTACATT
LOC_Os04g35760
Target Sequence 
CGAAGCGTTCACAATTGCATACCGTGCAAAGATTGATGATGCAGAGTCAGCAGGCAGGATACCACAAAACATATCCTTGG
AGGTGTCATCCCCTGGTGTGGAGAGGGTTATCCGCATCCCTGATGATCTTGAACGCTTCAAAGAACGGGCCATGTATGTC
AGGTACACCATTACAAGCGACGGCGGAGAAGGGATGACGCCTCAGGAAGGCGATGGAGTTTTCAGGCTCATCTCCTACGA
CATGGACCTGTGCGAGTGCACCTGGGGTATAGCTGATGTGAAGATCAACAGGCAGCAGGCCGGCAAGGGAAGGCCCCTGA
GCAAGAAGCAGAGGGAGTGGCGGCTGCAGACGCCATTTGAGTCACTGAAGTTGGTCAGGGTGCATTCTGACTGCTGACTG
ATCAGATGCCTCTTTTGAGTAAATTTTTGTAGCCATCTGTTGTAATTTTGTATCATAGGTAAAAGGTGCTCTGCCATTGT
GTGTGTGCAGTAGCTATATCTGAAAAAACGTTTGTTATAGCAAGTGCCAACACCCAACAGTTACATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52307.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis