Browse Element(s) Details


Os.6341.1.S1_at

Description gb:AK068396.1
DB_XREF= gi:32978414
TID=Os.6341.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6341 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013149D19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149D19, full insert sequence.
FL= gb:AK068396.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3578011/11cytoplasm protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35739NANA4+21598187..21598789retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g35750OsAffx.14165.1.S1_at11/114+21604132..21604837expressed protein
LOC_Os04g35750OsAffx.14165.1.S1_x_at11/114+21604132..21604837expressed protein
LOC_Os04g35760Os.52307.1.S1_at11/114+21605505..21607861expressed protein
LOC_Os04g35770Os.52558.1.S1_at11/114+21608081..21609864Pectinesterase family protein, expressed
LOC_Os04g35770OsAffx.26346.1.S1_s_at11/114+21608081..21609864Pectinesterase family protein, expressed
LOC_Os04g35780Os.6341.1.S1_at11/114+21611821..21614243cytoplasm protein, putative, expressed
LOC_Os04g35790Os.52185.1.A1_at11/114+21624777..21628755expressed protein
LOC_Os04g35800Os.51094.1.A1_at10/114+21630798..21636341Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6341.1.S1_at--929--1271Chr04:21612390..21612414 (25 bp)
AGATCTGCTCTTGGATTCCCTGAAG
LOC_Os04g35780
Os.6341.1.S1_at--168--6031Chr04:21612364..21612388 (25 bp)
GAGATTCTTCTTCTTAGGTACCCCT
LOC_Os04g35780
Os.6341.1.S1_at--348--2671Chr04:21612302..21612326 (25 bp)
AAGCCGCTGTTAGATCTCAGTTCCA
LOC_Os04g35780
Os.6341.1.S1_at--247--7991Chr04:21612264..21612288 (25 bp)
GGATGCTTAGGTTCTCTTCATATGA
LOC_Os04g35780
Os.6341.1.S1_at--364--9791Chr04:21612232..21612256 (25 bp)
TAAGAGGGATCCATTTCACCGTGCC
LOC_Os04g35780
Os.6341.1.S1_at--924--10671Chr04:21612206..21612230 (25 bp)
TTCCATATCCGAATGGTTGCCCTGA
LOC_Os04g35780
Os.6341.1.S1_at--322--2891Chr04:21612177..21612201 (25 bp)
AAGGGTCTGTTCTCATACTGTGGTC
LOC_Os04g35780
Os.6341.1.S1_at--1003--10771Chr04:21612127..21612151 (25 bp)
TTGGACCCAATAGCTCGAAGGATAT
LOC_Os04g35780
Os.6341.1.S1_at--1028--5691Chr04:21612092..21612116 (25 bp)
GACTATACAACCTTCTTTCATTGCC
LOC_Os04g35780
Os.6341.1.S1_at--408--71Chr04:21612073..21612097 (25 bp)
ATTGCCTCGGCTCTGAAGTCTGAAC
LOC_Os04g35780
Os.6341.1.S1_at--486--10871Chr04:21611917..21611941 (25 bp)
TTGGCATCTCTGTACTAGGAAACTT
LOC_Os04g35780
Target Sequence 
AGATCTGCTCTTGGATTCCCTGAAGGGAGATTCTTCTTCTTAGGTACCCCTGCTACACTGACTGCAAGGGAGTCTGCTGT
CAAGGGTGAAGCCGCTGTTAGATCTCAGTTCCAGGAAGATCCTTATGGATGCTTAGGTTCTCTTCATATGAAGAGGCTTA
AGAGGGATCCATTTCACCGTGCCATTCCATATCCGAATGGTTGCCCTGAGCTGAAGGGTCTGTTCTCATACTGTGGTCTG
GTGCCTTACCCTGGGCAGCTTCCTTGGACCCAATAGCTCGAAGGATATACGAACCTTGGACTATACAACCTTCTTTCATT
GCCTCGGCTCTGAAGTCTGAACTGACAAAATAACTACTTGTGAAATGTGATGTATTCTTCCTGAATCCTGACTAAGACCA
CATTTACATTAGTGAGATTGTTTTTTTGTAACGGTGTATATCACATGATCAATATATGTTTTTTCAGTGTGATTTGGCAT
CTCTGTACTAGGAAACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6341.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis