Browse Element(s) Details


OsAffx.14165.1.S1_x_at

Description tigr:9632.m03445
TID=OsAffx.14165.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3575011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35720OsAffx.3289.2.A1_at10/114+21580128..21581511hypothetical protein
LOC_Os04g35730NANA4+21582589..21583281transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g35739NANA4+21598187..21598789retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g35750OsAffx.14165.1.S1_at11/114+21604132..21604837expressed protein
LOC_Os04g35750OsAffx.14165.1.S1_x_at11/114+21604132..21604837expressed protein
LOC_Os04g35760Os.52307.1.S1_at11/114+21605505..21607861expressed protein
LOC_Os04g35770Os.52558.1.S1_at11/114+21608081..21609864Pectinesterase family protein, expressed
LOC_Os04g35770OsAffx.26346.1.S1_s_at11/114+21608081..21609864Pectinesterase family protein, expressed
LOC_Os04g35780Os.6341.1.S1_at11/114+21611821..21614243cytoplasm protein, putative, expressed
LOC_Os04g35790Os.52185.1.A1_at11/114+21624777..21628755expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14165.1.S1_x_at--585--4091Chr04:21604752..21604776 (25 bp)
CGACGCACGTCACGGTGATCGTCAT
LOC_Os04g35750
OsAffx.14165.1.S1_x_at--1149--1831Chr04:21604750..21604774 (25 bp)
ACGCACGTCACGGTGATCGTCATCG
LOC_Os04g35750
OsAffx.14165.1.S1_x_at--256--9411Chr04:21604734..21604758 (25 bp)
TCGTCATCGTGGTCCCGATCGTGGG
LOC_Os04g35750
OsAffx.14165.1.S1_x_at--1113--491Chr04:21604729..21604753 (25 bp)
ATCGTGGTCCCGATCGTGGGCGTCA
LOC_Os04g35750
OsAffx.14165.1.S1_x_at--71--7511Chr04:21604726..21604750 (25 bp)
GTGGTCCCGATCGTGGGCGTCATCT
LOC_Os04g35750
OsAffx.14165.1.S1_x_at--718--7791Chr04:21604724..21604748 (25 bp)
GGTCCCGATCGTGGGCGTCATCTGC
LOC_Os04g35750
OsAffx.14165.1.S1_x_at--189--4051Chr04:21604719..21604743 (25 bp)
CGATCGTGGGCGTCATCTGCCTCGG
LOC_Os04g35750
OsAffx.14165.1.S1_x_at--592--3871Chr04:21604678..21604702 (25 bp)
CTGTTCGTCGTCTTCAGGAGGCGGC
LOC_Os04g35750
OsAffx.14165.1.S1_x_at--482--5311Chr04:21604589..21604613 (25 bp)
GAAGGTGACGGAGCACGTGCGCATC
LOC_Os04g35750
OsAffx.14165.1.S1_x_at--227--1511Chr04:21604578..21604602 (25 bp)
AGCACGTGCGCATCGTGGAGGGCGT
LOC_Os04g35750
OsAffx.14165.1.S1_x_at--1076--7291Chr04:21604573..21604597 (25 bp)
GTGCGCATCGTGGAGGGCGTCGTCG
LOC_Os04g35750
Target Sequence 
CGACGCACGTCACGGTGATCGTCATCGTGGTCCCGATCGTGGGCGTCATCTGCCTCGGCCTCCTCGCCGCGCTGCTGTTC
GTCGTCTTCAGGAGGCGGCGGCGCGCGCGGCGCGACGAGGAGGAGGAGGAAGCGAAGGTGGAGGAGGTGGAGGACGTGGA
GGTGAAGGTGACGGAGCACGTGCGCATCGTGGAGGGCGTCGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14165.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis