Browse Element(s) Details


Os.52558.1.S1_at

Description gb:AK067975.1
DB_XREF= gi:32977993
TID=Os.52558.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52558 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013126G21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013126G21, full insert sequence.
FL= gb:AK067975.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3577011/11Pectinesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35730NANA4+21582589..21583281transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g35739NANA4+21598187..21598789retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g35750OsAffx.14165.1.S1_at11/114+21604132..21604837expressed protein
LOC_Os04g35750OsAffx.14165.1.S1_x_at11/114+21604132..21604837expressed protein
LOC_Os04g35760Os.52307.1.S1_at11/114+21605505..21607861expressed protein
LOC_Os04g35770Os.52558.1.S1_at11/114+21608081..21609864Pectinesterase family protein, expressed
LOC_Os04g35770OsAffx.26346.1.S1_s_at11/114+21608081..21609864Pectinesterase family protein, expressed
LOC_Os04g35780Os.6341.1.S1_at11/114+21611821..21614243cytoplasm protein, putative, expressed
LOC_Os04g35790Os.52185.1.A1_at11/114+21624777..21628755expressed protein
LOC_Os04g35800Os.51094.1.A1_at10/114+21630798..21636341Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042545biological_processcell wall modification
GO:0005576cellular_componentextracellular region
GO:0005618cellular_componentcell wall
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52558.1.S1_at--511--411Chr04:21609549..21609573 (25 bp)
ATCAGTGTTTCTTGGTGGCAGTTCT
LOC_Os04g35770
Os.52558.1.S1_at--599--8491Chr04:21609564..21609588 (25 bp)
TGGCAGTTCTACATCACAATTTTGA
LOC_Os04g35770
Os.52558.1.S1_at--73--6351Chr04:21609609..21609633 (25 bp)
GATGCTCCAAAGGATCTGATGCCAA
LOC_Os04g35770
Os.52558.1.S1_at--871--6351Chr04:21609626..21609650 (25 bp)
GATGCCAACTGTATTGACACGGTAC
LOC_Os04g35770
Os.52558.1.S1_at--958--8831Chr04:21609640..21609664 (25 bp)
TGACACGGTACATAGGCCAACTGAT
LOC_Os04g35770
Os.52558.1.S1_at--610--8451Chr04:21609654..21609678 (25 bp)
GGCCAACTGATGTGGTTTCTTTTGT
LOC_Os04g35770
Os.52558.1.S1_at--623--9771Chr04:21609704..21609728 (25 bp)
TAATGTTTGGTTGCGCTTTTGGGCT
LOC_Os04g35770
Os.52558.1.S1_at--696--4891Chr04:21609718..21609742 (25 bp)
GCTTTTGGGCTAGTGTCTGGTTACA
LOC_Os04g35770
Os.52558.1.S1_at--549--7871Chr04:21609790..21609814 (25 bp)
GGTTTGCTGCGGAATATTTTACAAG
LOC_Os04g35770
Os.52558.1.S1_at--806--4891Chr04:21609814..21609838 (25 bp)
GCTTATTTATGTTTTGCTCCTGCAA
LOC_Os04g35770
Os.52558.1.S1_at--500--291Chr04:21609840..21609864 (25 bp)
ATAATTAGTTTGTGGTTGCCTCTGC
LOC_Os04g35770
Target Sequence 
ATCAGTGTTTCTTGGTGGCAGTTCTACATCACAATTTTGAAAATTATCTTGAGACTACAAGATGCTCCAAAGGATCTGAT
GCCAACTGTATTGACACGGTACATAGGCCAACTGATGTGGTTTCTTTTGTGTTTAGTTGTACCTTAGTTTTGTTTTAATG
TTTGGTTGCGCTTTTGGGCTAGTGTCTGGTTACAGATTTTGTAATTGCGTTAATTCTTTTGTAGAATACATATCAAAAAA
TGGTTTGCTGCGGAATATTTTACAAGCTTATTTATGTTTTGCTCCTGCAATATAATTAGTTTGTGGTTGCCTCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52558.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis