Browse Element(s) Details


Os.27038.1.S1_at

Description gb:AK061622.1
DB_XREF= gi:32971640
TID=Os.27038.1
CNT=16
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.27038 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-183-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-034-A06, full insert sequence.
FL= gb:AK068725.1 gb:AK061622.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3570011/11mitogen-activated kinase kinase kinase alpha, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35650Os.53977.1.S1_at11/114+21538025..21540846pentatricopeptide, putative, expressed
LOC_Os04g35650Os.50682.1.A1_x_at1/114+21538025..21540846pentatricopeptide, putative, expressed
LOC_Os04g35660OsAffx.14163.1.S1_at11/114+21546243..21547257No apical meristem protein, expressed
LOC_Os04g35670NANA4+21551318..21552325transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g35680Os.50533.1.S1_at11/114+21558280..21560175U-box domain containing protein, expressed
LOC_Os04g35690Os.57071.1.S1_at11/114+21563535..21564977TPR Domain containing protein, expressed
LOC_Os04g35700Os.27038.1.S1_at11/114+21565180..21571197mitogen-activated kinase kinase kinase alpha, putative, expressed
LOC_Os04g35710NANA4+21575558..21576310hypothetical protein
LOC_Os04g35720OsAffx.3289.2.A1_at10/114+21580128..21581511hypothetical protein
LOC_Os04g35730NANA4+21582589..21583281transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27038.1.S1_at--1106--7771Chr04:21565678..21565702 (25 bp)
GGTGCTACTTCCTATAATCTATCAA
LOC_Os04g35700
Os.27038.1.S1_at--569--5191Chr04:21565629..21565653 (25 bp)
GAATTCCCACGATTTCGGATACCTG
LOC_Os04g35700
Os.27038.1.S1_at--118--9931Chr04:21565570..21565594 (25 bp)
TACGGCTCCCCAAAGAGGTTCTGAG
LOC_Os04g35700
Os.27038.1.S1_at--424--10591Chr04:21565552..21565576 (25 bp)
TTCTGAGCGTCAGTCATCCATGAGT
LOC_Os04g35700
Os.27038.1.S1_at--185--5211Chr04:21565506..21565530 (25 bp)
GAATTGTTCCCATGACATCGTAGAT
LOC_Os04g35700
Os.27038.1.S1_at--723--7051Chr04:21565451..21565475 (25 bp)
GTAACTCTGTTACTACACCGATCTG
LOC_Os04g35700
Os.27038.1.S1_at--814--4151Chr04:21565342..21565366 (25 bp)
CGCCTCCACTTTGTATTATGCTGTA
LOC_Os04g35700
Os.27038.1.S1_at--535--9931Chr04:21565298..21565322 (25 bp)
TACGGCCTGTAAATTCGCTAGCTTG
LOC_Os04g35700
Os.27038.1.S1_at--463--6271Chr04:21565254..21565278 (25 bp)
GATGTAGTTAGTTTAGCGCTTCCCT
LOC_Os04g35700
Os.27038.1.S1_at--760--8731Chr04:21565223..21565247 (25 bp)
TGTAAGGATTTCTCCCTACTGGGCA
LOC_Os04g35700
Os.27038.1.S1_at--606--1951Chr04:21565206..21565230 (25 bp)
ACTGGGCACTGGCTACTGCAATGAA
LOC_Os04g35700
Target Sequence 
GGTGCTACTTCCTATAATCTATCAAGCTACATGATGAACGAGACAAGACGAATTCCCACGATTTCGGATACCTGGCAGGA
TATCAGCCAGTTGAAGGTCCAAAGCCCCTACGGCTCCCCAAAGAGGTTCTGAGCGTCAGTCATCCATGAGTGCTGATGAA
TGTTCAGCAGGAGAATTGTTCCCATGACATCGTAGATATATAATGTTAGAGATGTCAGCAACATGTCGTAACTCTGTTAC
TACACCGATCTGATTTTACTGTACAGTATAGAAAGGCTCCACGAGGAAAGAGGCTGTTGACAAGAGAGGAATTTCTGTAT
ATCTGTAGGCGGTTGTCGCCTCCACTTTGTATTATGCTGTACTATATCAGTACATAAAAATACGGCCTGTAAATTCGCTA
GCTTGGAGAAGCTGACGTTTGGATGATGTAGTTAGTTTAGCGCTTCCCTAGCAGATGTAAGGATTTCTCCCTACTGGGCA
CTGGCTACTGCAATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27038.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis