Browse Element(s) Details


Os.50533.1.S1_at

Description gb:AK121647.1
DB_XREF= gi:37991270
TID=Os.50533.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50533 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033058N21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033058N21, full insert sequence.
FL= gb:AK121647.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3568011/11U-box domain containing protein, expressed
LOC_Os06g019101/11agamous-like MADS box protein OPMADS1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35650Os.53977.1.S1_at11/114+21538025..21540846pentatricopeptide, putative, expressed
LOC_Os04g35650Os.50682.1.A1_x_at1/114+21538025..21540846pentatricopeptide, putative, expressed
LOC_Os04g35660OsAffx.14163.1.S1_at11/114+21546243..21547257No apical meristem protein, expressed
LOC_Os04g35670NANA4+21551318..21552325transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g35680Os.50533.1.S1_at11/114+21558280..21560175U-box domain containing protein, expressed
LOC_Os04g35690Os.57071.1.S1_at11/114+21563535..21564977TPR Domain containing protein, expressed
LOC_Os04g35700Os.27038.1.S1_at11/114+21565180..21571197mitogen-activated kinase kinase kinase alpha, putative, expressed
LOC_Os04g35710NANA4+21575558..21576310hypothetical protein
LOC_Os04g35720OsAffx.3289.2.A1_at10/114+21580128..21581511hypothetical protein
LOC_Os04g35730NANA4+21582589..21583281transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50533.1.S1_at--25--4151Chr04:21559839..21559863 (25 bp)
CGCTGGTGAGGCACGTGTTCATGAT
LOC_Os04g35680
Os.50533.1.S1_at--1070--7751Chr04:21559843..21559867 (25 bp)
GGTGAGGCACGTGTTCATGATGAAC
LOC_Os04g35680
Os.50533.1.S1_at--806--711Chr04:21559859..21559883 (25 bp)
ATGATGAACTCGAGCAACGACGGCA
LOC_Os04g35680
Os.50533.1.S1_at--706--4831Chr04:21560032..21560056 (25 bp)
GCTCAAGCTGCTCAAATCCATGTGA
LOC_Os04g35680
Os.50533.1.S1_at--1018--6292Chr06:510002..510021 (20 bp)
GATGATGAATCTTTTCTTCTAGAAT
LOC_Os06g01910
Os.50533.1.S1_at--743--3131Chr04:21560083..21560107 (25 bp)
AATTATTGTAGACGCCATTGCCGGA
LOC_Os04g35680
Os.50533.1.S1_at--78--5251Chr04:21560090..21560114 (25 bp)
GTAGACGCCATTGCCGGAGTTTAAG
LOC_Os04g35680
Os.50533.1.S1_at--1089--4311Chr04:21560096..21560120 (25 bp)
GCCATTGCCGGAGTTTAAGGTGGTA
LOC_Os04g35680
Os.50533.1.S1_at--484--711Chr04:21560122..21560146 (25 bp)
ATGATGATGTTCTTGTAAGCTGTAA
LOC_Os04g35680
Os.50533.1.S1_at--5--7071Chr04:21560136..21560160 (25 bp)
GTAAGCTGTAAGTTTGTGCGTCAAG
LOC_Os04g35680
Os.50533.1.S1_at--911--9771Chr04:21560144..21560168 (25 bp)
TAAGTTTGTGCGTCAAGAATGTCTT
LOC_Os04g35680
Target Sequence 
CGCTGGTGAGGCACGTGTTCATGATGAACTCGAGCAACGACGGCAGCGAGCACGCGGTGGCGGCGCTGCTGGCCGTGTGC
AGGGAGTCGCGGGCGGCGCGGAGCGAGGCGGCCGGCGCCGGCGTGGTGACGCTGCTGCTGCTGCTGCTGCAGAGCCAGTG
CGGCGCCAGGGCGAAGGCCAAGGCCAGGTCTCTGCTCAAGCTGCTCAAATCCATGTGAAAATGATGATGAATCTTTTCTT
CTAGAATTATTGTAGACGCCATTGCCGGAGTTTAAGGTGGTAGATGATGATGTTCTTGTAAGCTGTAAGTTTGTGCGTCA
AGAATGTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50533.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis