Browse Element(s) Details


OsAffx.2566.1.S1_x_at

Description tigr:9630.m00978
TID=OsAffx.2566.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1056010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10520Os.50238.1.S1_x_at11/112+5529956..5536941subtilisin-like protease, putative, expressed
LOC_Os02g10530Os.54540.1.S1_at10/112+5548055..5549534expressed protein
LOC_Os02g10540Os.25094.1.A1_at11/112+5550089..5552103Ribosomal protein L7/L12 C-terminal domain containing protein, expressed
LOC_Os02g10550OsAffx.11976.2.S1_s_at11/112+5554686..5556179NB-ARC domain containing protein, expressed
LOC_Os02g10560OsAffx.2566.1.S1_at10/112+5560274..5561053hypothetical protein
LOC_Os02g10560OsAffx.2566.1.S1_x_at10/112+5560274..5561053hypothetical protein
LOC_Os02g10560OsAffx.3289.2.A1_at1/112+5560274..5561053hypothetical protein
LOC_Os02g10570OsAffx.2567.1.S1_at11/112+5561298..5563775hypothetical protein
LOC_Os02g10570OsAffx.16205.1.S1_at1/112+5561298..5563775hypothetical protein
LOC_Os02g10580OsAffx.11976.1.S1_at11/112+5566073..5567620NB-ARC domain containing protein, expressed
LOC_Os02g10580OsAffx.11976.2.S1_s_at11/112+5566073..5567620NB-ARC domain containing protein, expressed
LOC_Os02g10590Os.52104.1.S1_at11/112+5567953..5569801peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os02g10590OsAffx.29478.1.S1_x_at2/112+5567953..5569801peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os02g10590OsAffx.29478.1.S1_at1/112+5567953..5569801peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os02g10600OsAffx.11977.1.S1_at11/112+5573182..5578000F-box protein interaction domain containing protein, expressed
LOC_Os02g10600Os.28395.1.S1_x_at11/112+5573182..5578000F-box protein interaction domain containing protein, expressed
LOC_Os02g10614OsAffx.24188.1.S1_at11/112+5584279..5586144expressed protein
LOC_Os02g10614OsAffx.24188.1.S1_x_at11/112+5584279..5586144expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2566.1.S1_x_at--365--9493Chr10:11090725..11090748 (24 bp)
TCTGCGCTGCAGATCAAGAAGTGGT
NONE
OsAffx.2566.1.S1_x_at--118--9731NONE
TCAAGAAGTGGTGTTGATGCTGCCG
NONE
OsAffx.2566.1.S1_x_at--906--4111Chr02:5560908..5560932 (25 bp)
CGAAGGAGCTGTTGCCGCTGGAGAT
LOC_Os02g10560
OsAffx.2566.1.S1_x_at--352--8551Chr02:5560926..5560950 (25 bp)
TGGAGATGGAGGTACTTCCGCCCAA
LOC_Os02g10560
OsAffx.2566.1.S1_x_at--868--6011Chr02:5560928..5560952 (25 bp)
GAGATGGAGGTACTTCCGCCCAAGT
LOC_Os02g10560
OsAffx.2566.1.S1_x_at--970--791Chr02:5560931..5560955 (25 bp)
ATGGAGGTACTTCCGCCCAAGTTGG
LOC_Os02g10560
OsAffx.2566.1.S1_x_at--862--7011Chr02:5560937..5560961 (25 bp)
GTACTTCCGCCCAAGTTGGAGGATA
LOC_Os02g10560
OsAffx.2566.1.S1_x_at--578--3471Chr02:5560972..5560996 (25 bp)
CAGGGTGATAATATTGCTGCTGGAG
LOC_Os02g10560
OsAffx.2566.1.S1_x_at--271--231Chr02:5560982..5561006 (25 bp)
ATATTGCTGCTGGAGATTCTTAATC
LOC_Os02g10560
OsAffx.2566.1.S1_x_at--602--6571Chr02:5560996..5561020 (25 bp)
GATTCTTAATCTACACAAGGATCTG
LOC_Os02g10560
OsAffx.2566.1.S1_x_at--10--9571Chr02:5560999..5561023 (25 bp)
TCTTAATCTACACAAGGATCTGCTG
LOC_Os02g10560
Target Sequence 
TCTGCGCTGCAGATCAAGAAGTGGTGTTGATGCTGCCGGAGGCGAAGGAGCTGTTGCCGCTGGAGATGGAGGTACTTCCG
CCCAAGTTGGAGGATATGCTGGAGAGCAGGGTGATAATATTGCTGCTGGAGATTCTTAATCTACACAAGGATCTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2566.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis