Browse Element(s) Details


Os.16187.1.S1_at

Description gb:AK072970.1
DB_XREF= gi:32982993
TID=Os.16187.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16187 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023144C18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023144C18, full insert sequence.
FL= gb:AK072970.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g106309/11C2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10570OsAffx.2567.1.S1_at11/112+5561298..5563775hypothetical protein
LOC_Os02g10570OsAffx.16205.1.S1_at1/112+5561298..5563775hypothetical protein
LOC_Os02g10580OsAffx.11976.1.S1_at11/112+5566073..5567620NB-ARC domain containing protein, expressed
LOC_Os02g10580OsAffx.11976.2.S1_s_at11/112+5566073..5567620NB-ARC domain containing protein, expressed
LOC_Os02g10590Os.52104.1.S1_at11/112+5567953..5569801peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os02g10590OsAffx.29478.1.S1_x_at2/112+5567953..5569801peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os02g10590OsAffx.29478.1.S1_at1/112+5567953..5569801peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os02g10600OsAffx.11977.1.S1_at11/112+5573182..5578000F-box protein interaction domain containing protein, expressed
LOC_Os02g10600Os.28395.1.S1_x_at11/112+5573182..5578000F-box protein interaction domain containing protein, expressed
LOC_Os02g10614OsAffx.24188.1.S1_at11/112+5584279..5586144expressed protein
LOC_Os02g10614OsAffx.24188.1.S1_x_at11/112+5584279..5586144expressed protein
LOC_Os02g10630Os.16187.1.S1_at9/112+5586959..5593645C2 domain containing protein, expressed
LOC_Os02g10640Os.292.1.S1_a_at11/112+5595400..560085226S protease regulatory subunit S10B, putative, expressed
LOC_Os02g10650Os.18613.1.S1_at11/112+5604274..5609482polyphosphoinositide binding protein Ssh1p, putative, expressed
LOC_Os02g10660Os.26628.1.S1_at11/112+5611553..5614433Glycosyl hydrolases family 17 protein, expressed
LOC_Os02g10670OsAffx.11978.1.S1_at11/112+5617300..5619951expressed protein
LOC_Os02g10670OsAffx.25435.1.S1_at1/112+5617300..5619951expressed protein
LOC_Os02g10670OsAffx.6133.1.S1_at1/112+5617300..5619951expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16187.1.S1_at--738--2311Chr02:5587478..5587500 (23 bp)
AAAGGTGTGAGCTGACATCCCGTGC
LOC_Os02g10630
Os.16187.1.S1_at--488--4831Chr02:5587390..5587414 (25 bp)
GCTCAGTAGCCAACACGATCTGTGT
LOC_Os02g10630
Os.16187.1.S1_at--183--6411Chr02:5587374..5587398 (25 bp)
GATCTGTGTTAGCTCGACGGTATCA
LOC_Os02g10630
Os.16187.1.S1_at--473--5751Chr02:5587359..5587383 (25 bp)
GACGGTATCACTGCTTCCTTTAGCT
LOC_Os02g10630
Os.16187.1.S1_at--813--10331Chr02:5587341..5587365 (25 bp)
TTTAGCTCTGTTCACTCTTCTGCTG
LOC_Os02g10630
Os.16187.1.S1_at--59--3831Chr02:5587319..5587343 (25 bp)
CTGCCAACCTATCGCCTATGTAAAA
LOC_Os02g10630
Os.16187.1.S1_at--1013--6511Chr02:5587172..5587196 (25 bp)
GATATTTGACCCAAAGTCGTGTGAT
LOC_Os02g10630
Os.16187.1.S1_at--782--7191NONE
GTCGTGTGATAAACGTGTGCCCTTT
NONE
Os.16187.1.S1_at--568--1911NONE
ACGTGTGCCCTTTATGTTCTCATAT
NONE
Os.16187.1.S1_at--285--2931Chr02:5587043..5587067 (25 bp)
AAGGACTTCCATAGGAGTCACGAAT
LOC_Os02g10630
Os.16187.1.S1_at--628--1171Chr02:5586985..5587009 (25 bp)
AGTAATGCCTTTTCTTCACATTCCA
LOC_Os02g10630
Target Sequence 
AAAGGTGTGAGCTGACATCCCGTGCAAGATGAGTAGTAGATTGATTCATGTGTTCTGAACAATTAGAAGACTAAACGAAG
GCAGCAAAGCTCAGTAGCCAACACGATCTGTGTTAGCTCGACGGTATCACTGCTTCCTTTAGCTCTGTTCACTCTTCTGC
TGCCAACCTATCGCCTATGTAAAATTGTGAATACCTTGATAGGAATCCAACAAATTTGCATATACATATTTAAAACTGTA
AACACGTGATTACAGAATGGAACGAAAAGAATGAACTTATTTNNGGTGGCAGTAATTTTCTATAAAGATATTTGACCCAA
AGTCGTGTGATAAACGTGTGCCCTTTATGTTCTCATATGTGATTCACCTTGCTAAATAATTACCGGAATTTCGAGTTGTA
AGTAAGTGAGATTTTTTTTATTTTCAAAAGATCTTAAAAGGACTTCCATAGGAGTCACGAATTACAGAACATTTACGGTA
ACAAGCAAACAAATTAGTAATGCCTTTTCTTCACATTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16187.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis