Browse Element(s) Details


OsAffx.11978.1.S1_at

Description tigr:9630.m00989
TID=OsAffx.11978.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1067011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10630Os.16187.1.S1_at9/112+5586959..5593645C2 domain containing protein, expressed
LOC_Os02g10640Os.292.1.S1_a_at11/112+5595400..560085226S protease regulatory subunit S10B, putative, expressed
LOC_Os02g10650Os.18613.1.S1_at11/112+5604274..5609482polyphosphoinositide binding protein Ssh1p, putative, expressed
LOC_Os02g10660Os.26628.1.S1_at11/112+5611553..5614433Glycosyl hydrolases family 17 protein, expressed
LOC_Os02g10670OsAffx.11978.1.S1_at11/112+5617300..5619951expressed protein
LOC_Os02g10670OsAffx.25435.1.S1_at1/112+5617300..5619951expressed protein
LOC_Os02g10670OsAffx.6133.1.S1_at1/112+5617300..5619951expressed protein
LOC_Os02g10680NANA2+5622522..5622924hypothetical protein
LOC_Os02g10690Os.9051.1.S1_at11/112+5623354..5627318Targeting protein for Xklp2 containing protein, expressed
LOC_Os02g10700Os.6093.1.S1_a_at11/112+5628117..5631254Leucine Rich Repeat family protein, expressed
LOC_Os02g10710Os.11526.1.S2_at1/112+5639315..5640360Hsp20/alpha crystallin family protein, expressed
LOC_Os02g10720Os.11526.1.S1_at11/112+5640780..5644590expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11978.1.S1_at--588--1611Chr02:5617316..5617340 (25 bp)
AGCTGTCGTTCAAGCCCTCGTTGCA
LOC_Os02g10670
OsAffx.11978.1.S1_at--423--3691Chr02:5617448..5617472 (25 bp)
CTATTGGTGGCTGGTTAAGGACGTT
LOC_Os02g10670
OsAffx.11978.1.S1_at--517--951Chr02:5617465..5617489 (25 bp)
AGGACGTTGTCGCTGTGCAAACTTG
LOC_Os02g10670
OsAffx.11978.1.S1_at--98--7352Chr02:5617479..5617503 (25 bp)
GTGCAAACTTGCCACAGTGAAATGA
LOC_Os02g10670
OsAffx.11978.1.S1_at--368--5291Chr02:5617502..5617521 (20 bp)
GAATGGTTTTGCTTTCTTGGACCTG
LOC_Os02g10670
OsAffx.11978.1.S1_at--867--6991Chr02:5618158..5618182 (25 bp)
GTACTCGAGTAATCTCATGGCTCAT
LOC_Os02g10670
OsAffx.11978.1.S1_at--1121--851Chr02:5618174..5618198 (25 bp)
ATGGCTCATCTCATTTTACATGGTA
LOC_Os02g10670
OsAffx.11978.1.S1_at--1054--10371Chr02:5618187..5618211 (25 bp)
TTTTACATGGTACTACATCCCGTCG
LOC_Os02g10670
OsAffx.11978.1.S1_at--1134--4131Chr02:5618347..5618371 (25 bp)
CGCGGCTGGGCTGATCTATCCGGAT
LOC_Os02g10670
OsAffx.11978.1.S1_at--35--7632Chr03:34395522..34395701 (25 bp)
GGGAACATACTGTGACACGATGCAT
NONE
OsAffx.11978.1.S1_at--78--7371Chr02:5618397..5618421 (25 bp)
GTGACACGATGCATTTGCCAGCGAT
LOC_Os02g10670
Target Sequence 
AGCTGTCGTTCAAGCCCTCGTTGCACCACCCACTCGGCGGCGGCGATCACTACAGCACCGCTCGGCAGCGGCGGGGCTAT
TGGTGGCTGGTTAAGGACGTTGTCGCTGTGCAAACTTGCCACAGTGAAATGAATGGTTTTGCTTTCTTGGACCTGTACTC
GAGTAATCTCATGGCTCATCTCATTTTACATGGTACTACATCCCGTCGACTACCAGTTCTTGGGCCTCCCGGCAACCTCC
AATTCTGGGGCGGTGGCAACGGCGCAGGCGGCGACAATGGAGGCAGCACCACAGGTGGCAGCGGCGCCGGTGTCGCTCCG
GGAGGCGGCGACGTCAGCGGCGGCGCGGCTGGGCTGATCTATCCGGATTCAACTCGTCATCGGGGAACATACTGTGACAC
GATGCATTTGCCAGCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11978.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis