Browse Element(s) Details


Os.26628.1.S1_at

Description gb:AK100683.1
DB_XREF= gi:32985892
TID=Os.26628.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26628 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023113M05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023113M05, full insert sequence.
FL= gb:AK100683.1 gb:AK067916.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1066011/11Glycosyl hydrolases family 17 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10630Os.16187.1.S1_at9/112+5586959..5593645C2 domain containing protein, expressed
LOC_Os02g10640Os.292.1.S1_a_at11/112+5595400..560085226S protease regulatory subunit S10B, putative, expressed
LOC_Os02g10650Os.18613.1.S1_at11/112+5604274..5609482polyphosphoinositide binding protein Ssh1p, putative, expressed
LOC_Os02g10660Os.26628.1.S1_at11/112+5611553..5614433Glycosyl hydrolases family 17 protein, expressed
LOC_Os02g10670OsAffx.11978.1.S1_at11/112+5617300..5619951expressed protein
LOC_Os02g10670OsAffx.25435.1.S1_at1/112+5617300..5619951expressed protein
LOC_Os02g10670OsAffx.6133.1.S1_at1/112+5617300..5619951expressed protein
LOC_Os02g10680NANA2+5622522..5622924hypothetical protein
LOC_Os02g10690Os.9051.1.S1_at11/112+5623354..5627318Targeting protein for Xklp2 containing protein, expressed
LOC_Os02g10700Os.6093.1.S1_a_at11/112+5628117..5631254Leucine Rich Repeat family protein, expressed
LOC_Os02g10710Os.11526.1.S2_at1/112+5639315..5640360Hsp20/alpha crystallin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26628.1.S1_at--923--4011Chr02:5612791..5612813 (23 bp)
CGTCGTCAATTATCTCATTCAAGAG
LOC_Os02g10660
Os.26628.1.S1_at--194--1351Chr02:5611893..5611917 (25 bp)
AGAGTTGTCCCTTCCTGTACATAGT
LOC_Os02g10660
Os.26628.1.S1_at--382--291Chr02:5611873..5611897 (25 bp)
ATAGTCTCTGTTCCTCTTGTAGTCT
LOC_Os02g10660
Os.26628.1.S1_at--486--3611Chr02:5611858..5611882 (25 bp)
CTTGTAGTCTTGTAGCAAACGATTA
LOC_Os02g10660
Os.26628.1.S1_at--466--4791Chr02:5611794..5611818 (25 bp)
GCTCCAGAGCTCAGCAATCAGCATA
LOC_Os02g10660
Os.26628.1.S1_at--291--4951Chr02:5611774..5611798 (25 bp)
GCATAACCTCCAGAACTTAACCTAA
LOC_Os02g10660
Os.26628.1.S1_at--1123--1151Chr02:5611750..5611774 (25 bp)
AGTACATAACTATGCCACTTTCCCC
LOC_Os02g10660
Os.26628.1.S1_at--1116--10011Chr02:5611628..5611652 (25 bp)
TAGAATTTCCACTACTACGACTTGA
LOC_Os02g10660
Os.26628.1.S1_at--623--9931Chr02:5611613..5611637 (25 bp)
TACGACTTGAATTTAGAGCCTTCTG
LOC_Os02g10660
Os.26628.1.S1_at--71--5871Chr02:5611598..5611622 (25 bp)
GAGCCTTCTGAATTACTCAAGGCAT
LOC_Os02g10660
Os.26628.1.S1_at--355--2931Chr02:5611580..5611604 (25 bp)
AAGGCATCTGATTGCTACAAGCTAT
LOC_Os02g10660
Target Sequence 
CGTCGTCAATTATCTCATTCAAGAGAGCTCGAGAAAGGGGATGGATGGCGCTTGTACAGTACTCGGCTACACTTCTGTCA
TGTACATTCATTTTTCTAGTTTTAAGTTAGTGATCTGATTACAACCAGATTAATTAGTTACTAACTGTCAATCGATCCGT
CATGCCCATGTGAAAAAAAAANTATTCGTTCTTTGGATGCAAATTCCACGAAAATTGTGGCATAGAAATTCAAAAGAGTT
GTCCCTTCCTGTACATAGTCTCTGTTCCTCTTGTAGTCTTGTAGCAAACGATTATCTAGATGTAGTTCTTATTTCTGAAT
ATGTTCTTCTCATGCTCCAGAGCTCAGCAATCAGCATAACCTCCAGAACTTAACCTAAGTACATAACTATGCCACTTTCC
CCTTTTTCAAACCAGAATTTGAATTACATTACACCAAATAAACTTCTCCTAAATTGAAACATTACTAGTTGTGTAGTTTC
ATTTTTTGAACTATCAGATTAGAATTTCCACTACTACGACTTGAATTTAGAGCCTTCTGAATTACTCAAGGCATCTGATT
GCTACAAGCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26628.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis