Browse Element(s) Details


Os.18613.1.S1_at

Description gb:AK068100.1
DB_XREF= gi:32978118
TID=Os.18613.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18613 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013130K11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013130K11, full insert sequence.
FL= gb:AK068100.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1065011/11polyphosphoinositide binding protein Ssh1p, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10614OsAffx.24188.1.S1_at11/112+5584279..5586144expressed protein
LOC_Os02g10614OsAffx.24188.1.S1_x_at11/112+5584279..5586144expressed protein
LOC_Os02g10630Os.16187.1.S1_at9/112+5586959..5593645C2 domain containing protein, expressed
LOC_Os02g10640Os.292.1.S1_a_at11/112+5595400..560085226S protease regulatory subunit S10B, putative, expressed
LOC_Os02g10650Os.18613.1.S1_at11/112+5604274..5609482polyphosphoinositide binding protein Ssh1p, putative, expressed
LOC_Os02g10660Os.26628.1.S1_at11/112+5611553..5614433Glycosyl hydrolases family 17 protein, expressed
LOC_Os02g10670OsAffx.11978.1.S1_at11/112+5617300..5619951expressed protein
LOC_Os02g10670OsAffx.25435.1.S1_at1/112+5617300..5619951expressed protein
LOC_Os02g10670OsAffx.6133.1.S1_at1/112+5617300..5619951expressed protein
LOC_Os02g10680NANA2+5622522..5622924hypothetical protein
LOC_Os02g10690Os.9051.1.S1_at11/112+5623354..5627318Targeting protein for Xklp2 containing protein, expressed
LOC_Os02g10700Os.6093.1.S1_a_at11/112+5628117..5631254Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006656biological_processphosphatidylcholine biosynthesis
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
GO:0005488molecular_functionbinding
GO:0008526molecular_functionphosphatidylinositol transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18613.1.S1_at--1071--9911Chr02:5608887..5608911 (25 bp)
TACTGACGCTGATGACTGCTACTCA
LOC_Os02g10650
Os.18613.1.S1_at--79--6431Chr02:5608988..5609012 (25 bp)
GATCATTACATGTCAGCATTCCCGA
LOC_Os02g10650
Os.18613.1.S1_at--184--1691Chr02:5609012..5609036 (25 bp)
AGCCTGACCCCGATGACGCAAAGAT
LOC_Os02g10650
Os.18613.1.S1_at--529--6151Chr02:5609041..5609065 (25 bp)
GAGGTCATCCAAGCTGAATTCCAGA
LOC_Os02g10650
Os.18613.1.S1_at--633--551Chr02:5609085..5609109 (25 bp)
ATCCGCCAATGGTCACAAGGTTTAG
LOC_Os02g10650
Os.18613.1.S1_at--130--31Chr02:5609117..5609141 (25 bp)
ATTGGCCATCTGCAGAACACCTTAA
LOC_Os02g10650
Os.18613.1.S1_at--594--9131Chr02:5609146..5609170 (25 bp)
TGCTGGTGACTTCTGAATCTGATGA
LOC_Os02g10650
Os.18613.1.S1_at--957--5331Chr02:5609169..5609193 (25 bp)
GAAGTTGATTACTACTGTCCATGTC
LOC_Os02g10650
Os.18613.1.S1_at--413--1031Chr02:5609254..5609278 (25 bp)
AGGTCTTGCATCATTATATTCCCAT
LOC_Os02g10650
Os.18613.1.S1_at--891--2491Chr02:5609292..5609316 (25 bp)
AACAGTGGTGCAGCCTTGAGTTGAT
LOC_Os02g10650
Os.18613.1.S1_at--300--6031Chr02:5609324..5609348 (25 bp)
GAGATGAACCAGTCACCAGTGTATA
LOC_Os02g10650
Target Sequence 
TACTGACGCTGATGACTGCTACTCACTTGACCANCNTTTCCACAAAGAGCTTTATGGTCACATTGAGGAGCTAGCATCGN
GCAAGGNACTCATCAAGATGGGATCATTACATGTCAGCATTCCCGAGCCTGACCCCGATGACGCAAAGATTGTTGAGGTC
ATCCAAGCTGAATTCCAGAAGATCGGTGAGCAGAATGGATCCGCCAATGGTCACAAGGTTTAGCCAAAACATTGGCCATC
TGCAGAACACCTTAACCAGTGCTGGTGACTTCTGAATCTGATGAAGTTGATTACTACTGTCCATGTCAGTAATTTTGTTG
ACAACCCCCCATTTTCTGGGGGGAATATAGCAGCAGCAGCAGCAGCAAGGTCTTGCATCATTATATTCCCATGATGATGC
AAATAAACAGTGGTGCAGCCTTGAGTTGATAGAGGAAGAGATGAACCAGTCACCAGTGTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18613.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis