Browse Element(s) Details


OsAffx.6133.1.S1_at

Description tigr:9631.m05115
TID=OsAffx.6133.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to PR-1 like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g523009/11expressed protein
LOC_Os01g026702/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g106701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52239OsAffx.25688.1.S1_at11/113+29953770..29964043homeodomain protein JUBEL1, putative, expressed
LOC_Os03g52239OsAffx.3581.1.S1_at10/113+29953770..29964043homeodomain protein JUBEL1, putative, expressed
LOC_Os03g52239OsAffx.17864.1.S1_x_at1/113+29953770..29964043homeodomain protein JUBEL1, putative, expressed
LOC_Os03g52258OsAffx.13466.1.S1_at10/113+29964436..29964755hypothetical protein
LOC_Os03g52280NANA3+29973887..29975263hypothetical protein
LOC_Os03g52284NANA3+29977524..29979158expressed protein
LOC_Os03g52290OsAffx.3582.1.S1_x_at11/113+29983078..29983773hypothetical protein
LOC_Os03g52300Os.9956.1.S1_at11/113+29984664..29987427expressed protein
LOC_Os03g52300OsAffx.6133.1.S1_at9/113+29984664..29987427expressed protein
LOC_Os03g52310Os.7726.1.S1_at10/113+29989628..29993399hAT family dimerisation domain containing protein, expressed
LOC_Os03g52320Os.50790.1.S1_at11/113+29995741..29999342SSXT protein containing protein, expressed
LOC_Os03g52330OsAffx.25690.1.S1_at10/113+30009207..30010173hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005576cellular_componentextracellular region
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6133.1.S1_at--43--10651Chr03:29987094..29987118 (25 bp)
TTCGCGGACATGAGCGGGAGCCCCT
LOC_Os03g52300
OsAffx.6133.1.S1_at--526--5892Chr11:2335883..2335942 (25 bp)
GAGCGGGAGCCCCTACGGCGCGAAC
NONE
OsAffx.6133.1.S1_at--474--2151Chr03:29985795..29985819 (25 bp)
ACAGCAAGCAGCACCTAATCTCGCC
LOC_Os03g52300
OsAffx.6133.1.S1_at--759--1831Chr03:29985745..29985769 (25 bp)
ACGCGGGAGCCGTCGTGCTTCGGCG
LOC_Os03g52300
OsAffx.6133.1.S1_at--435--7371Chr03:29985687..29985711 (25 bp)
GTGACTCTGGGCACGGCGGCACACT
LOC_Os03g52300
OsAffx.6133.1.S1_at--705--4692Chr01:901452..901893 (25 bp)
GCGGCACACTGGATCGCAAGCTGCA
LOC_Os01g02670
OsAffx.6133.1.S1_at--6--2193Chr02:5619406..5619427 (22 bp)
ACACTGGATCGCAAGCTGCAGGCGG
LOC_Os02g10670
OsAffx.6133.1.S1_at--759--4011NONE
CGTCGTCGAGCCGATTGACTGGTTG
NONE
OsAffx.6133.1.S1_at--371--9411NONE
TCGTCGAGCCGATTGACTGGTTGGT
NONE
OsAffx.6133.1.S1_at--80--2674Chr02:5620253..5620277 (25 bp)
AAGCCGGTGCTGAGCGGGTTGTCGA
NONE
OsAffx.6133.1.S1_at--153--6635Chr02:5620270..5620294 (25 bp)
GTTGTCGATGAAGCCGGTGCCGAGC
NONE
Target Sequence 
TTCGCGGACATGAGCGGGAGCCCCTACGGCGCGAACCAGGGGTGGGCGAGCTACCCGGCGCGCCCCGCGGAGGTGGTGGC
GTCGTGGGTGGCGCAGGGGAGCAGCAACAGCAAGCAGCACCTAATCTCGCCGGAAGAAAAACCAAAGCCGGAGGCGACGC
GGGAGCCGTCGTGCTTCGGCGACAGCTCGGTCGGCATCGCCGTCGCCGCCGCTGGTGACTCTGGGCACGGCGGCACACTG
GATCGCAAGCTGCAGGCGGCGACCACGGCGGTGTACAGTGCCTCGCTGCACTCCGGGAAGGAGCTCCTCATCCGGGTCAC
GTGGACGCGGAACGCTGCCGGAGCCACCGGCCTCGCCGTCGTCGAGCCGATTGACTGGTTGGTGGGGATGGCGGCGAGGG
ACGGCGCGGCGCTGAAGCCGGTGCTGAGCGGGTTGTCGATGAAGCCGGTGCCGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6133.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis