Browse Element(s) Details


OsAffx.3581.1.S1_at

Description tigr:9631.m05109
TID=OsAffx.3581.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to homeodomain protein JUBEL1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5223910/11homeodomain protein JUBEL1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52220NANA3+29930378..29930908NA
LOC_Os03g52239OsAffx.25688.1.S1_at11/113+29953770..29964043homeodomain protein JUBEL1, putative, expressed
LOC_Os03g52239OsAffx.3581.1.S1_at10/113+29953770..29964043homeodomain protein JUBEL1, putative, expressed
LOC_Os03g52239OsAffx.17864.1.S1_x_at1/113+29953770..29964043homeodomain protein JUBEL1, putative, expressed
LOC_Os03g52258OsAffx.13466.1.S1_at10/113+29964436..29964755hypothetical protein
LOC_Os03g52280NANA3+29973887..29975263hypothetical protein
LOC_Os03g52284NANA3+29977524..29979158expressed protein
LOC_Os03g52290OsAffx.3582.1.S1_x_at11/113+29983078..29983773hypothetical protein
LOC_Os03g52300Os.9956.1.S1_at11/113+29984664..29987427expressed protein
LOC_Os03g52300OsAffx.6133.1.S1_at9/113+29984664..29987427expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3581.1.S1_at--954--4111Chr03:29955602..29955626 (25 bp)
CGCTTCGAGCACCAGCGCAAGAAGG
LOC_Os03g52239
OsAffx.3581.1.S1_at--278--1911NONE
ACGTGTGATACGTGTTGCGTCACTA
NONE
OsAffx.3581.1.S1_at--541--1911Chr03:29956165..29956189 (25 bp)
ACGTGTTGCGTCACTACCAGGTGAA
LOC_Os03g52239
OsAffx.3581.1.S1_at--510--3451Chr03:29957022..29957046 (25 bp)
CAGGAGGTACAACCACTACTGCGAC
LOC_Os03g52239
OsAffx.3581.1.S1_at--685--2011Chr03:29957036..29957060 (25 bp)
ACTACTGCGACCAGATGCAGATGGT
LOC_Os03g52239
OsAffx.3581.1.S1_at--342--3431Chr03:29957053..29957077 (25 bp)
CAGATGGTGGTGAACTTCTTCGACT
LOC_Os03g52239
OsAffx.3581.1.S1_at--578--8971Chr03:29957063..29957087 (25 bp)
TGAACTTCTTCGACTCGGTGATGGG
LOC_Os03g52239
OsAffx.3581.1.S1_at--608--8331Chr03:29957252..29957276 (25 bp)
GGCTGCGGGCCATCGACCAGAGCCT
LOC_Os03g52239
OsAffx.3581.1.S1_at--149--1811Chr03:29959201..29959221 (21 bp)
ACCCGTACCCGAGCGATGCAGATAA
LOC_Os03g52239
OsAffx.3581.1.S1_at--421--6331Chr03:29959211..29959235 (25 bp)
GATGCAGATAAGCACCTGTTGGCGA
LOC_Os03g52239
OsAffx.3581.1.S1_at--846--9791Chr03:29959219..29959243 (25 bp)
TAAGCACCTGTTGGCGAGGCAGACC
LOC_Os03g52239
Target Sequence 
CGCTTCGAGCACCAGCGCAAGAAGGCCAAGCTCATCTCCATGCTCGACGAGGCACGTGTGATACGTGTTGCGTCACTACC
AGGTGAAAAAGTCTTTTATATGGGAGTGGACAGGAGGTACAACCACTACTGCGACCAGATGCAGATGGTGGTGAACTTCT
TCGACTCGGTGATGGGGTTCGGGGCGGCGACGCCGTACACGGCGCTGGCGCAGAAGGCCATGTCGAGGCACTTCCGGTGC
CTCAAGGACGCGATCGCGGCGCAGCTGAGGGGGACGTGCGAGGCGCTGGGGGAGAAGGACGCCGGCACGGGGTCGGGGCT
GACCAAGGGGGAGACGCCGCGGCTGCGGGCCATCGACCAGAGCCTCCGGCAGCAGCGCGCCTTCCACCACATGGGGATCA
TGGAGCAGGAGGCGTGGCGCCCCCAGCGCGGCCTCCCCGAGCGCTCCGTCAACATCCTCCGCTCCTGGCTCTTCGAACAC
TTCCTCCACCCGTACCCGAGCGATGCAGATAAGCACCTGTTGGCGAGGCAGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3581.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis