Browse Element(s) Details


OsAffx.17864.1.S1_x_at

Description tigr:9637.m02034
TID=OsAffx.17864.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Phosphatidylinositol-4-phosphate 5-Kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2374010/11Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os06g147501/11Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os03g522391/11homeodomain protein JUBEL1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23690Os.17618.2.S1_x_at1/119+14083215..14086555UBX domain containing protein, expressed
LOC_Os09g23690Os.17618.1.S1_at1/119+14083215..14086555UBX domain containing protein, expressed
LOC_Os09g23700NANA9+14087505..14088130hypothetical protein
LOC_Os09g23710OsAffx.17863.1.S1_at11/119+14091584..14092186hypothetical protein
LOC_Os09g23720Os.22695.1.S1_s_at11/119+14094778..14098856expressed protein
LOC_Os09g23730OsAffx.29994.1.S1_s_at11/119+14105184..14106336AT hook motif family protein, expressed
LOC_Os09g23730Os.49541.1.S1_at11/119+14105184..14106336AT hook motif family protein, expressed
LOC_Os09g23740Os.19425.1.S1_at11/119+14109034..14117238Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os09g23740OsAffx.17864.1.S1_x_at10/119+14109034..14117238Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os09g23740OsAffx.17864.1.S1_at8/119+14109034..14117238Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os09g23750OsAffx.6376.1.S1_at10/119+14124906..14126182hypothetical protein
LOC_Os09g23760OsAffx.17865.1.S1_at11/119+14141914..14143375hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
GO:0016308molecular_function1-phosphatidylinositol-4-phosphate 5-kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17864.1.S1_x_at--645--9631Chr09:14111555..14111579 (25 bp)
TCAGGCACTTGGCAGAATCACTAAC
LOC_Os09g23740
OsAffx.17864.1.S1_x_at--233--3011Chr09:14111540..14111564 (25 bp)
AATCACTAACTTCTAGGAGCCCGAC
LOC_Os09g23740
OsAffx.17864.1.S1_x_at--725--7991Chr09:14111525..14111549 (25 bp)
GGAGCCCGACTTGTTTGGCTAAAAT
LOC_Os09g23740
OsAffx.17864.1.S1_x_at--1107--7291Chr09:14111289..14111313 (25 bp)
GTGCGGTCACGCTATAATTCTGATA
LOC_Os09g23740
OsAffx.17864.1.S1_x_at--250--9751Chr09:14111275..14111299 (25 bp)
TAATTCTGATACATCCGGCCACAAT
LOC_Os09g23740
OsAffx.17864.1.S1_x_at--282--1371Chr09:14111166..14111190 (25 bp)
AGAGCTGTCTGGAACGATACATCAT
LOC_Os09g23740
OsAffx.17864.1.S1_x_at--716--6471NONE
GATACATCATTCCTTGCGTCATTGG
NONE
OsAffx.17864.1.S1_x_at--371--31Chr09:14109766..14109790 (25 bp)
ATTGGACGTCATGGACTACTCGCTT
LOC_Os09g23740
OsAffx.17864.1.S1_x_at--1013--1431Chr09:14109719..14109743 (25 bp)
AGAACGAGCTCGTGATCGGCATCAT
LOC_Os09g23740
OsAffx.17864.1.S1_x_at--706--9591Chr09:14109599..14109623 (25 bp)
TCATATCGCCGGTCCAGTACAAGAA
LOC_Os09g23740
OsAffx.17864.1.S1_x_at--27--5273Chr03:29957124..29957497 (25 bp)
GAAGGCCATGTCGAGGTACTTCCTC
LOC_Os03g52239
Target Sequence 
TCAGGCACTTGGCAGAATCACTAACTTCTAGGAGCCCGACTTGTTTGGCTAAAATAATGGGACTTTATCAGGTTAATATT
AAGGGCTTGAAAGGAGGGCGTGAGGTAAAGATGGATCTTATGGTGATGGAGAACATTTTCTTCCAACGAACAATATCTAG
GGTCTATGACCTAAAGGGTTCCGTGCGGTCACGCTATAATTCTGATACATCCGGCCACAATAAAGTACTTTTAGATTCTA
ATCTCATAGAGGCACAGCATACAAATCCTATATTTTTGGGGAGCAAGGCAAAACAAAGAATGGAAAGAGCTGTCTGGAAC
GATACATCATTCCTTGCGTCATTGGACGTCATGGACTACTCGCTTCTGGTCGGCGTAGACGAGAGGAAGAACGAGCTCGT
GATCGGCATCATCGACTTCCTCCGGCAGTACACCTGGGACAAGCAGCTGGAGACGTGGGTGAAGGCCTCCGGCATCCTGG
GCGGCTCCAAGAACGAGGCCCCCACCGTCATATCGCCGGTCCAGTACAAGAAGAGGTTCAGGAAGGCCATGTCGAGGTAC
TTCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17864.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis