Browse Element(s) Details


OsAffx.17863.1.S1_at

Description tigr:9637.m02031
TID=OsAffx.17863.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2371011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23670Os.35344.18.S1_x_at10/119+14067610..14070736hypothetical protein
LOC_Os09g23670Os.35344.3.S1_x_at9/119+14067610..14070736hypothetical protein
LOC_Os09g23670OsAffx.22940.5.S1_x_at3/119+14067610..14070736hypothetical protein
LOC_Os09g23680OsAffx.17862.1.S1_at11/119+14077033..14077377hypothetical protein
LOC_Os09g23690Os.17618.2.S1_x_at1/119+14083215..14086555UBX domain containing protein, expressed
LOC_Os09g23690Os.17618.1.S1_at1/119+14083215..14086555UBX domain containing protein, expressed
LOC_Os09g23700NANA9+14087505..14088130hypothetical protein
LOC_Os09g23710OsAffx.17863.1.S1_at11/119+14091584..14092186hypothetical protein
LOC_Os09g23720Os.22695.1.S1_s_at11/119+14094778..14098856expressed protein
LOC_Os09g23730OsAffx.29994.1.S1_s_at11/119+14105184..14106336AT hook motif family protein, expressed
LOC_Os09g23730Os.49541.1.S1_at11/119+14105184..14106336AT hook motif family protein, expressed
LOC_Os09g23740Os.19425.1.S1_at11/119+14109034..14117238Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os09g23740OsAffx.17864.1.S1_x_at10/119+14109034..14117238Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os09g23740OsAffx.17864.1.S1_at8/119+14109034..14117238Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17863.1.S1_at--302--4091Chr09:14091984..14092008 (25 bp)
CGACGAAGTGGCTGCCGCCCAAGTG
LOC_Os09g23710
OsAffx.17863.1.S1_at--1100--4571Chr09:14091954..14091978 (25 bp)
GCGCACCGACGGATGACTTGGGCTT
LOC_Os09g23710
OsAffx.17863.1.S1_at--1160--3591Chr09:14091932..14091956 (25 bp)
CTTGGGCTCGCAGTGGGACTCCACG
LOC_Os09g23710
OsAffx.17863.1.S1_at--543--4751Chr09:14091890..14091914 (25 bp)
GCTGAAGCCTGTGGAGAGAAGCTCC
LOC_Os09g23710
OsAffx.17863.1.S1_at--487--5971Chr09:14091875..14091899 (25 bp)
GAGAAGCTCCAGGAAATCCCCTAAG
LOC_Os09g23710
OsAffx.17863.1.S1_at--389--5531Chr09:14091863..14091887 (25 bp)
GAAATCCCCTAAGAAGCTGCGGCTG
LOC_Os09g23710
OsAffx.17863.1.S1_at--476--7591Chr09:14091763..14091787 (25 bp)
GGGCTATCCGGTTCCACTATCACCT
LOC_Os09g23710
OsAffx.17863.1.S1_at--376--1691Chr09:14091736..14091760 (25 bp)
AGCCTCTGTCCCAGCGATGCTGACA
LOC_Os09g23710
OsAffx.17863.1.S1_at--480--611Chr09:14091720..14091744 (25 bp)
ATGCTGACAACGCTGAGGCCACTGA
LOC_Os09g23710
OsAffx.17863.1.S1_at--777--1831Chr09:14091711..14091735 (25 bp)
ACGCTGAGGCCACTGACACTGACTT
LOC_Os09g23710
OsAffx.17863.1.S1_at--435--5611Chr09:14091616..14091640 (25 bp)
GACAAGGACGGAGTGAACTATGCCC
LOC_Os09g23710
Target Sequence 
CGACGAAGTGGCTGCCGCCCAAGTGGACGAGCGCACCGACGGATGACTTGGGCTTGGGCTCGCAGTGGGACTCCACGCGG
CGGAGCACGCAGTCGCTGAAGCCTGTGGAGAGAAGCTCCAGGAAATCCCCTAAGAAGCTGCGGCTGCCGCACCCCACGGA
GCGCAAACGCACCACCTTCCTCCTGAACGACGACGACAACGAACCCTCGCTACGGCGGCCGGGGCTATCCGGTTCCACTA
TCACCTCCAGCCTCTGTCCCAGCGATGCTGACAACGCTGAGGCCACTGACACTGACTTCCTCCTTGCCGACAAGCCGCCT
CCACCACCGTTGGCCAACGACGCCGAGCCCTGGTGGCCGCCGCTCGACGACAAGGACGGAGTGAACTATGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17863.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis