Browse Element(s) Details


Os.19425.1.S1_at

Description gb:AK063300.1
DB_XREF= gi:32973318
TID=Os.19425.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19425 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-113-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-F02, full insert sequence.
FL= gb:AK063300.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2374011/11Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23690Os.17618.2.S1_x_at1/119+14083215..14086555UBX domain containing protein, expressed
LOC_Os09g23690Os.17618.1.S1_at1/119+14083215..14086555UBX domain containing protein, expressed
LOC_Os09g23700NANA9+14087505..14088130hypothetical protein
LOC_Os09g23710OsAffx.17863.1.S1_at11/119+14091584..14092186hypothetical protein
LOC_Os09g23720Os.22695.1.S1_s_at11/119+14094778..14098856expressed protein
LOC_Os09g23730OsAffx.29994.1.S1_s_at11/119+14105184..14106336AT hook motif family protein, expressed
LOC_Os09g23730Os.49541.1.S1_at11/119+14105184..14106336AT hook motif family protein, expressed
LOC_Os09g23740Os.19425.1.S1_at11/119+14109034..14117238Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os09g23740OsAffx.17864.1.S1_x_at10/119+14109034..14117238Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os09g23740OsAffx.17864.1.S1_at8/119+14109034..14117238Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os09g23750OsAffx.6376.1.S1_at10/119+14124906..14126182hypothetical protein
LOC_Os09g23760OsAffx.17865.1.S1_at11/119+14141914..14143375hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0008270molecular_functionzinc ion binding
GO:0016308molecular_function1-phosphatidylinositol-4-phosphate 5-kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19425.1.S1_at--1149--8591Chr09:14109525..14109549 (25 bp)
TGGTCCTCATCATAACAGGGCTTTT
LOC_Os09g23740
Os.19425.1.S1_at--702--1791Chr09:14109484..14109508 (25 bp)
ACCCTACCCTACGTTGAAGCAGAAT
LOC_Os09g23740
Os.19425.1.S1_at--568--5391Chr09:14109469..14109493 (25 bp)
GAAGCAGAATCGTCACCGTTTCATC
LOC_Os09g23740
Os.19425.1.S1_at--269--1691Chr09:14109396..14109420 (25 bp)
AGCCATTTAGCCAACCATTCTTTAA
LOC_Os09g23740
Os.19425.1.S1_at--594--3571Chr09:14109381..14109405 (25 bp)
CATTCTTTAATTGGTTCGGTCACTT
LOC_Os09g23740
Os.19425.1.S1_at--72--7911Chr09:14109369..14109393 (25 bp)
GGTTCGGTCACTTACTAACATTGTT
LOC_Os09g23740
Os.19425.1.S1_at--954--7471Chr09:14109283..14109307 (25 bp)
GTGGGCTGGACACCAAGCATGCCAA
LOC_Os09g23740
Os.19425.1.S1_at--962--4931Chr09:14109218..14109242 (25 bp)
GCTTGGTCCCTGTAGAATGTGCATT
LOC_Os09g23740
Os.19425.1.S1_at--680--4951Chr09:14109198..14109222 (25 bp)
GCATTTGCTGCTAGCGAAGGCGGAT
LOC_Os09g23740
Os.19425.1.S1_at--114--4691Chr09:14109179..14109203 (25 bp)
GCGGATTATTCGACGCCGTGCTGTG
LOC_Os09g23740
Os.19425.1.S1_at--236--3891Chr09:14109159..14109183 (25 bp)
CTGTGCCTCATTTCTTCTGATTTGA
LOC_Os09g23740
Target Sequence 
TGGTCCTCATCATAACAGGGCTTTTCCTGCCTCCCTCTTCCACCCTACCCTACGTTGAAGCAGAATCGTCACCGTTTCAT
CCCCGCTGTAATTTTTTTTTGAGCAAAATGGGGGTGAAACGAGACAGGTAGCCATTTAGCCAACCATTCTTTAATTGGTT
CGGTCACTTACTAACATTGTTGTAGCCTTAGAATGATAGAAATCATAGAATAGAAACAGAGGATCAGGCCACCTTGTNGT
GTGTGGGCTGGACACCAAGCATGCCAATTGCAGTGTCTTTCTCCCCGTGATCTCAAGGCGGAAAAAGGCTTGGTCCCTGT
AGAATGTGCATTTGCTGCTAGCGAAGGCGGATTATTCGACGCCGTGCTGTGCCTCATTTCTTCTGATTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19425.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis