Browse Element(s) Details


OsAffx.17865.1.S1_at

Description tigr:9637.m02037
TID=OsAffx.17865.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2376011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23740Os.19425.1.S1_at11/119+14109034..14117238Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os09g23740OsAffx.17864.1.S1_x_at10/119+14109034..14117238Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os09g23740OsAffx.17864.1.S1_at8/119+14109034..14117238Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os09g23750OsAffx.6376.1.S1_at10/119+14124906..14126182hypothetical protein
LOC_Os09g23760OsAffx.17865.1.S1_at11/119+14141914..14143375hypothetical protein
LOC_Os09g23770OsAffx.6378.1.S1_at10/119+14147038..14148472expressed protein
LOC_Os09g23780Os.56369.1.S1_at11/119+14152040..14153149expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17865.1.S1_at--134--7951Chr09:14143099..14143319 (25 bp)
GGATAGTGCGGTGAGTTCTTCCTCA
LOC_Os09g23760
OsAffx.17865.1.S1_at--221--7391Chr09:14143089..14143111 (23 bp)
GTGAGTTCTTCCTCAGATCCTGCAT
LOC_Os09g23760
OsAffx.17865.1.S1_at--785--6371Chr09:14143074..14143098 (25 bp)
GATCCTGCATCGGAACTTGGTGACA
LOC_Os09g23760
OsAffx.17865.1.S1_at--887--4971Chr09:14143068..14143092 (25 bp)
GCATCGGAACTTGGTGACATGGAGA
LOC_Os09g23760
OsAffx.17865.1.S1_at--553--5511Chr09:14143045..14143069 (25 bp)
GAACAATGAGTTTCTGGTTTATTCT
LOC_Os09g23760
OsAffx.17865.1.S1_at--944--3891Chr09:14143032..14143056 (25 bp)
CTGGTTTATTCTTATGTCAGCAAGA
LOC_Os09g23760
OsAffx.17865.1.S1_at--114--6471Chr09:14143002..14143026 (25 bp)
GATAATATCGAGAACCTCCTTGACA
LOC_Os09g23760
OsAffx.17865.1.S1_at--207--711Chr09:14142856..14142974 (25 bp)
ATGAGGCTGATGCAAGGTTCGCTCA
LOC_Os09g23760
OsAffx.17865.1.S1_at--1113--8851Chr09:14142849..14142967 (25 bp)
TGATGCAAGGTTCGCTCAGCTTAGA
LOC_Os09g23760
OsAffx.17865.1.S1_at--550--6711Chr09:14142840..14142864 (25 bp)
GTTCGCTCAGCTTAGACCATACAAG
LOC_Os09g23760
OsAffx.17865.1.S1_at--728--10031Chr09:14142828..14142852 (25 bp)
TAGACCATACAAGGCGTTTGCATGT
LOC_Os09g23760
Target Sequence 
GGATAGTGCGGTGAGTTCTTCCTCAGATCCTGCATCGGAACTTGGTGACATGGAGAACAATGAGTTTCTGGTTTATTCTT
ATGTCAGCAAGAAATTGGATAATATCGAGAACCTCCTTGACAAGATGGAAACTTTGAGAAAAGAAAGTGATGAGGCTGAT
GCAAGGTTCGCTCAGCTTAGACCATACAAGGCGTTTGCATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17865.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis